miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2902 5' -57 NC_001493.1 + 331 0.68 0.716827
Target:  5'- cCGGCCCGauaaucCCGAGAAuGGAC-CGCUUg -3'
miRNA:   3'- -GCCGGGCcu----GGUUUUU-CCUGcGCGAG- -5'
2902 5' -57 NC_001493.1 + 2846 0.7 0.644916
Target:  5'- aCGGCCCucccaccccucacGaaGACgGAcGAGGGCGUGCUCa -3'
miRNA:   3'- -GCCGGG-------------C--CUGgUUuUUCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 3205 0.66 0.86051
Target:  5'- aGGaCCCGGACgAGGucGAGGAUGC-Ca- -3'
miRNA:   3'- gCC-GGGCCUGgUUU--UUCCUGCGcGag -5'
2902 5' -57 NC_001493.1 + 5202 0.67 0.784152
Target:  5'- aCGGUCUcGACCcc-GAGGGCuCGCUCa -3'
miRNA:   3'- -GCCGGGcCUGGuuuUUCCUGcGCGAG- -5'
2902 5' -57 NC_001493.1 + 5872 0.66 0.852758
Target:  5'- -cGUCCGGAUCAucGAGAGGGCGUuucccgggggaGCUg -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 5986 0.67 0.802293
Target:  5'- -cGUCCGGAUCAucGAGAGGACGUuucccgggggaGCUa -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 6071 0.67 0.802293
Target:  5'- -cGUCCGGAUCAucGAGAGGACGUuucccgggggaGCUg -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 8335 0.66 0.844806
Target:  5'- gCGGUUCGGGCCGGG-GGGuCGgagGCUCg -3'
miRNA:   3'- -GCCGGGCCUGGUUUuUCCuGCg--CGAG- -5'
2902 5' -57 NC_001493.1 + 11052 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 11094 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 13331 0.69 0.706845
Target:  5'- gGGCCgugCGGugCucggcGGGACGUGUUCg -3'
miRNA:   3'- gCCGG---GCCugGuuuu-UCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 13521 0.7 0.656167
Target:  5'- gCGGUCCGGAaccguaCAGGucGGGCGCGaaCa -3'
miRNA:   3'- -GCCGGGCCUg-----GUUUuuCCUGCGCgaG- -5'
2902 5' -57 NC_001493.1 + 15192 0.67 0.774872
Target:  5'- gGGUCCGGACCAGGAAcccgccGACG-GCg- -3'
miRNA:   3'- gCCGGGCCUGGUUUUUc-----CUGCgCGag -5'
2902 5' -57 NC_001493.1 + 15648 0.71 0.564376
Target:  5'- uGGUCCGGAgCAAAGAaGaccGCGCGUUCg -3'
miRNA:   3'- gCCGGGCCUgGUUUUUcC---UGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 17610 0.66 0.828329
Target:  5'- aGGCCCGugggacccucGACCucAGAGGGgGUGCcCg -3'
miRNA:   3'- gCCGGGC----------CUGGuuUUUCCUgCGCGaG- -5'
2902 5' -57 NC_001493.1 + 17617 0.69 0.666376
Target:  5'- gCGGCCCcGACCccGGGAucgcucGGGugGCGCg- -3'
miRNA:   3'- -GCCGGGcCUGG--UUUU------UCCugCGCGag -5'
2902 5' -57 NC_001493.1 + 17659 0.68 0.755937
Target:  5'- --aCCUGGAUCAAGGGGGACGgGUa- -3'
miRNA:   3'- gccGGGCCUGGUUUUUCCUGCgCGag -5'
2902 5' -57 NC_001493.1 + 17742 0.66 0.83666
Target:  5'- gCGuGCCCGGGaucguguuCCAGAucGGccugauaGCGCUCa -3'
miRNA:   3'- -GC-CGGGCCU--------GGUUUuuCCug-----CGCGAG- -5'
2902 5' -57 NC_001493.1 + 19810 0.66 0.844806
Target:  5'- gGGaCCGGACCAGAgcGGGuuguucauggUGCGCa- -3'
miRNA:   3'- gCCgGGCCUGGUUUuuCCU----------GCGCGag -5'
2902 5' -57 NC_001493.1 + 21045 0.67 0.793296
Target:  5'- gGGCCCacACgAGAGAGGAucuucuugaagaCGUGCUCg -3'
miRNA:   3'- gCCGGGccUGgUUUUUCCU------------GCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.