miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 3' -51.9 NC_006146.1 + 60444 1.08 0.007892
Target:  5'- gCCAUGGCCGAGAAGCUGGUGAACUUUa -3'
miRNA:   3'- -GGUACCGGCUCUUCGACCACUUGAAA- -5'
29022 3' -51.9 NC_006146.1 + 115003 0.88 0.153156
Target:  5'- gCCAUGGCCGuGGAGCUGGUGGAg--- -3'
miRNA:   3'- -GGUACCGGCuCUUCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 57013 0.82 0.310259
Target:  5'- gCCAUGGCCGAGGAGgaGGUGGc---- -3'
miRNA:   3'- -GGUACCGGCUCUUCgaCCACUugaaa -5'
29022 3' -51.9 NC_006146.1 + 59316 0.8 0.426055
Target:  5'- aCCuggcUGGCCGAGAGGCUGGcGGugUUg -3'
miRNA:   3'- -GGu---ACCGGCUCUUCGACCaCUugAAa -5'
29022 3' -51.9 NC_006146.1 + 23478 0.78 0.482946
Target:  5'- gCCGUGGCCaGGuacgGGCUGGUGGGCUc- -3'
miRNA:   3'- -GGUACCGGcUCu---UCGACCACUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 21985 0.78 0.492785
Target:  5'- -aGUGGCgGGGAAGCUGGUGGAg--- -3'
miRNA:   3'- ggUACCGgCUCUUCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 103605 0.78 0.492785
Target:  5'- aCGUGGCCcGGGAGCUGGcgGAGCUc- -3'
miRNA:   3'- gGUACCGGcUCUUCGACCa-CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 46068 0.78 0.522832
Target:  5'- gCGUGGCCGAGAAGCUGuauaaGAACa-- -3'
miRNA:   3'- gGUACCGGCUCUUCGACca---CUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 3995 0.78 0.533006
Target:  5'- gCCAUGGUCGAGgcGCUGaUGAACg-- -3'
miRNA:   3'- -GGUACCGGCUCuuCGACcACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 70160 0.75 0.66911
Target:  5'- uCC-UGGCCGGGgcGCUGGUGGccgGCg-- -3'
miRNA:   3'- -GGuACCGGCUCuuCGACCACU---UGaaa -5'
29022 3' -51.9 NC_006146.1 + 131310 0.73 0.79939
Target:  5'- cCCAUGGCgGGGggGCUGGa------- -3'
miRNA:   3'- -GGUACCGgCUCuuCGACCacuugaaa -5'
29022 3' -51.9 NC_006146.1 + 60447 0.71 0.859703
Target:  5'- aCCAUGGCCGAGuGAGCggcaggccgcgGG-GAGCg-- -3'
miRNA:   3'- -GGUACCGGCUC-UUCGa----------CCaCUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 122115 0.7 0.896398
Target:  5'- aCCggGGCCuucguGAAGCUGGUGGAg--- -3'
miRNA:   3'- -GGuaCCGGcu---CUUCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 55161 0.7 0.903019
Target:  5'- gUCAgccGCCGGGAGGCcagGGUGGACg-- -3'
miRNA:   3'- -GGUac-CGGCUCUUCGa--CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 85809 0.7 0.903019
Target:  5'- aCCAUGacaucaCUGGGGAGCUGGUGccuuGGCUUUa -3'
miRNA:   3'- -GGUACc-----GGCUCUUCGACCAC----UUGAAA- -5'
29022 3' -51.9 NC_006146.1 + 147683 0.7 0.909392
Target:  5'- ---gGGCCuGGGAGGCUGGUucuGGGCUg- -3'
miRNA:   3'- gguaCCGG-CUCUUCGACCA---CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 95359 0.7 0.915513
Target:  5'- gCAUGGCCGGGuaagacaacgGAGCcucGGUGGGCg-- -3'
miRNA:   3'- gGUACCGGCUC----------UUCGa--CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 150760 0.69 0.92138
Target:  5'- ---gGGCCuGGGAGGCUGGUucuggggcuGGACUUg -3'
miRNA:   3'- gguaCCGG-CUCUUCGACCA---------CUUGAAa -5'
29022 3' -51.9 NC_006146.1 + 153838 0.69 0.92138
Target:  5'- ---gGGCCuGGGAGGCUGGUucuggggcuGGACUUg -3'
miRNA:   3'- gguaCCGG-CUCUUCGACCA---------CUUGAAa -5'
29022 3' -51.9 NC_006146.1 + 156916 0.69 0.92138
Target:  5'- ---gGGCCuGGGAGGCUGGUucuggggcuGGACUUg -3'
miRNA:   3'- gguaCCGG-CUCUUCGACCA---------CUUGAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.