miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 3' -51.9 NC_006146.1 + 60444 1.08 0.007892
Target:  5'- gCCAUGGCCGAGAAGCUGGUGAACUUUa -3'
miRNA:   3'- -GGUACCGGCUCUUCGACCACUUGAAA- -5'
29022 3' -51.9 NC_006146.1 + 57125 0.66 0.984131
Target:  5'- aUAUGGUcccuaauuuCGGGggGCUGGUGGccgaccgccGCUUc -3'
miRNA:   3'- gGUACCG---------GCUCuuCGACCACU---------UGAAa -5'
29022 3' -51.9 NC_006146.1 + 2926 0.67 0.980003
Target:  5'- aCCAUGuuuaCCGGGGAGCUGG-GAGu--- -3'
miRNA:   3'- -GGUACc---GGCUCUUCGACCaCUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 41605 0.67 0.972382
Target:  5'- ---aGGcCCGGGggGCUGGUccGCUg- -3'
miRNA:   3'- gguaCC-GGCUCuuCGACCAcuUGAaa -5'
29022 3' -51.9 NC_006146.1 + 61474 0.68 0.959231
Target:  5'- gCCGUGGCCGAGuGGCaGGaucaccaGGGCUc- -3'
miRNA:   3'- -GGUACCGGCUCuUCGaCCa------CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 170574 0.69 0.941835
Target:  5'- cCCGuUGGCCGGGAgaaugacAGCUGGgcguggcGAGCg-- -3'
miRNA:   3'- -GGU-ACCGGCUCU-------UCGACCa------CUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 51413 0.66 0.985935
Target:  5'- ---gGGCUGAGGAGUUGGagugcgcgGGACUa- -3'
miRNA:   3'- gguaCCGGCUCUUCGACCa-------CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 67073 0.66 0.984131
Target:  5'- gCCAgacgGGCCGAGAAGg-GGUcGGCg-- -3'
miRNA:   3'- -GGUa---CCGGCUCUUCgaCCAcUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 4416 0.67 0.969429
Target:  5'- uCCGgacGGUCcAGggGCUGGUGAAa--- -3'
miRNA:   3'- -GGUa--CCGGcUCuuCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 122115 0.7 0.896398
Target:  5'- aCCggGGCCuucguGAAGCUGGUGGAg--- -3'
miRNA:   3'- -GGuaCCGGcu---CUUCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 3995 0.78 0.533006
Target:  5'- gCCAUGGUCGAGgcGCUGaUGAACg-- -3'
miRNA:   3'- -GGUACCGGCUCuuCGACcACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 102594 0.66 0.987578
Target:  5'- ---aGGUCGGGggGUcuaggGGUGAGCg-- -3'
miRNA:   3'- gguaCCGGCUCuuCGa----CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 70160 0.75 0.66911
Target:  5'- uCC-UGGCCGGGgcGCUGGUGGccgGCg-- -3'
miRNA:   3'- -GGuACCGGCUCuuCGACCACU---UGaaa -5'
29022 3' -51.9 NC_006146.1 + 44788 0.66 0.982157
Target:  5'- cCCA-GGCCGGGGAuCUGGaUGGugUg- -3'
miRNA:   3'- -GGUaCCGGCUCUUcGACC-ACUugAaa -5'
29022 3' -51.9 NC_006146.1 + 65496 0.66 0.987578
Target:  5'- --cUGGCCGGcguGggGCUGGuUGGugUg- -3'
miRNA:   3'- gguACCGGCU---CuuCGACC-ACUugAaa -5'
29022 3' -51.9 NC_006146.1 + 74437 0.66 0.985412
Target:  5'- gCCGUGGCUGAGugaagaccccgaggGAGCaguggacagggGGUGGACa-- -3'
miRNA:   3'- -GGUACCGGCUC--------------UUCGa----------CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 150667 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 153744 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 156822 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 51218 0.67 0.969429
Target:  5'- uCCAcgaGGCCGGGGuGGCgGGUGAGgUUg -3'
miRNA:   3'- -GGUa--CCGGCUCU-UCGaCCACUUgAAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.