miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 3' -51.9 NC_006146.1 + 2926 0.67 0.980003
Target:  5'- aCCAUGuuuaCCGGGGAGCUGG-GAGu--- -3'
miRNA:   3'- -GGUACc---GGCUCUUCGACCaCUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 3995 0.78 0.533006
Target:  5'- gCCAUGGUCGAGgcGCUGaUGAACg-- -3'
miRNA:   3'- -GGUACCGGCUCuuCGACcACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 4416 0.67 0.969429
Target:  5'- uCCGgacGGUCcAGggGCUGGUGAAa--- -3'
miRNA:   3'- -GGUa--CCGGcUCuuCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 15411 0.67 0.977661
Target:  5'- gCCAggUGGCCucaGAGggGCUGGcccGGCUg- -3'
miRNA:   3'- -GGU--ACCGG---CUCuuCGACCac-UUGAaa -5'
29022 3' -51.9 NC_006146.1 + 15712 0.69 0.926994
Target:  5'- gCCAcUGGCCGAGGAGa-GG-GGGCUg- -3'
miRNA:   3'- -GGU-ACCGGCUCUUCgaCCaCUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 21985 0.78 0.492785
Target:  5'- -aGUGGCgGGGAAGCUGGUGGAg--- -3'
miRNA:   3'- ggUACCGgCUCUUCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 23478 0.78 0.482946
Target:  5'- gCCGUGGCCaGGuacgGGCUGGUGGGCUc- -3'
miRNA:   3'- -GGUACCGGcUCu---UCGACCACUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 24287 0.67 0.977661
Target:  5'- aCCcUGGCCG-GggGCUGGac-GCUg- -3'
miRNA:   3'- -GGuACCGGCuCuuCGACCacuUGAaa -5'
29022 3' -51.9 NC_006146.1 + 41605 0.67 0.972382
Target:  5'- ---aGGcCCGGGggGCUGGUccGCUg- -3'
miRNA:   3'- gguaCC-GGCUCuuCGACCAcuUGAaa -5'
29022 3' -51.9 NC_006146.1 + 42252 0.67 0.969429
Target:  5'- cCCuccGGCgCGAGGAGCUGGcucagcUGGGCg-- -3'
miRNA:   3'- -GGua-CCG-GCUCUUCGACC------ACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 44788 0.66 0.982157
Target:  5'- cCCA-GGCCGGGGAuCUGGaUGGugUg- -3'
miRNA:   3'- -GGUaCCGGCUCUUcGACC-ACUugAaa -5'
29022 3' -51.9 NC_006146.1 + 46068 0.78 0.522832
Target:  5'- gCGUGGCCGAGAAGCUGuauaaGAACa-- -3'
miRNA:   3'- gGUACCGGCUCUUCGACca---CUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 51218 0.67 0.969429
Target:  5'- uCCAcgaGGCCGGGGuGGCgGGUGAGgUUg -3'
miRNA:   3'- -GGUa--CCGGCUCU-UCGaCCACUUgAAa -5'
29022 3' -51.9 NC_006146.1 + 51413 0.66 0.985935
Target:  5'- ---gGGCUGAGGAGUUGGagugcgcgGGACUa- -3'
miRNA:   3'- gguaCCGGCUCUUCGACCa-------CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 55161 0.7 0.903019
Target:  5'- gUCAgccGCCGGGAGGCcagGGUGGACg-- -3'
miRNA:   3'- -GGUac-CGGCUCUUCGa--CCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 57013 0.82 0.310259
Target:  5'- gCCAUGGCCGAGGAGgaGGUGGc---- -3'
miRNA:   3'- -GGUACCGGCUCUUCgaCCACUugaaa -5'
29022 3' -51.9 NC_006146.1 + 57125 0.66 0.984131
Target:  5'- aUAUGGUcccuaauuuCGGGggGCUGGUGGccgaccgccGCUUc -3'
miRNA:   3'- gGUACCG---------GCUCuuCGACCACU---------UGAAa -5'
29022 3' -51.9 NC_006146.1 + 59316 0.8 0.426055
Target:  5'- aCCuggcUGGCCGAGAGGCUGGcGGugUUg -3'
miRNA:   3'- -GGu---ACCGGCUCUUCGACCaCUugAAa -5'
29022 3' -51.9 NC_006146.1 + 60444 1.08 0.007892
Target:  5'- gCCAUGGCCGAGAAGCUGGUGAACUUUa -3'
miRNA:   3'- -GGUACCGGCUCUUCGACCACUUGAAA- -5'
29022 3' -51.9 NC_006146.1 + 60447 0.71 0.859703
Target:  5'- aCCAUGGCCGAGuGAGCggcaggccgcgGG-GAGCg-- -3'
miRNA:   3'- -GGUACCGGCUC-UUCGa----------CCaCUUGaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.