miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 5' -51.2 NC_006146.1 + 145199 0.68 0.968633
Target:  5'- gGGGCUGG-C-CCGGCUUccacuccUGAGGGUa -3'
miRNA:   3'- aCUUGACCaGuGGUCGAA-------ACUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 153423 0.68 0.968944
Target:  5'- gGGGCgGGUgugGCUGGCUUUGgaGGGGCCg -3'
miRNA:   3'- aCUUGaCCAg--UGGUCGAAAC--UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 93437 0.68 0.968944
Target:  5'- cUGGGCcuuggcuaUGGUCaugGCCAGCUU--GGAGCUg -3'
miRNA:   3'- -ACUUG--------ACCAG---UGGUCGAAacUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 70170 0.68 0.971933
Target:  5'- gGcGCUGGUgGCCGGC---GAG-GCCg -3'
miRNA:   3'- aCuUGACCAgUGGUCGaaaCUCuCGG- -5'
29022 5' -51.2 NC_006146.1 + 52125 0.68 0.97471
Target:  5'- --cGCUGGaCACCAGCUc---GGGCCc -3'
miRNA:   3'- acuUGACCaGUGGUCGAaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 39065 0.68 0.97471
Target:  5'- gUGAA-UGGUCGCCGGCcuccggucUGGGgaaGGCCa -3'
miRNA:   3'- -ACUUgACCAGUGGUCGaa------ACUC---UCGG- -5'
29022 5' -51.2 NC_006146.1 + 139444 0.68 0.97471
Target:  5'- aGGACUGG-UACCugagAGCU--GAGAGUCu -3'
miRNA:   3'- aCUUGACCaGUGG----UCGAaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 117014 0.68 0.977281
Target:  5'- cUGGAcCUGGgcuaCGCCcuaacgggGGCgcUGAGGGCCa -3'
miRNA:   3'- -ACUU-GACCa---GUGG--------UCGaaACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 4480 0.67 0.979654
Target:  5'- gGGGCUGGUUACguGuCUUgugGAGAuggcacuggcggGCCa -3'
miRNA:   3'- aCUUGACCAGUGguC-GAAa--CUCU------------CGG- -5'
29022 5' -51.2 NC_006146.1 + 67904 0.67 0.979654
Target:  5'- cGAACUGG--GCCucg--UGGGAGCCg -3'
miRNA:   3'- aCUUGACCagUGGucgaaACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 46934 0.67 0.979654
Target:  5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3'
miRNA:   3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5'
29022 5' -51.2 NC_006146.1 + 62108 0.67 0.985671
Target:  5'- aGGACUGcUCGCCucGGCgg-GAGAccuGCCa -3'
miRNA:   3'- aCUUGACcAGUGG--UCGaaaCUCU---CGG- -5'
29022 5' -51.2 NC_006146.1 + 129465 0.67 0.987339
Target:  5'- ----aUGGUgcaaGCUAGCgagGAGAGCCg -3'
miRNA:   3'- acuugACCAg---UGGUCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 4332 0.67 0.987339
Target:  5'- aGGGCgGGUCGCU--CUUUGAGcAGCUc -3'
miRNA:   3'- aCUUGaCCAGUGGucGAAACUC-UCGG- -5'
29022 5' -51.2 NC_006146.1 + 169168 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 168236 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 107922 0.67 0.987339
Target:  5'- aUGGGa-GGUCGUCAGCUccUGGGAGCUc -3'
miRNA:   3'- -ACUUgaCCAGUGGUCGAa-ACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 167304 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 85825 0.66 0.988853
Target:  5'- gGAGCUGGU-GCCuuGGCUUUaaaaGAgGAGCUg -3'
miRNA:   3'- aCUUGACCAgUGG--UCGAAA----CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 69378 0.66 0.989827
Target:  5'- cGAGCUGGcagaagCGCCGGUacuugUUGAGGaacacggucugcucGCCa -3'
miRNA:   3'- aCUUGACCa-----GUGGUCGa----AACUCU--------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.