Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29024 | 5' | -52.6 | NC_006146.1 | + | 121425 | 0.67 | 0.969779 |
Target: 5'- -cAUGACCAacaucaggGCCCcgaucaucucgcuGGCUCGUCUCAu -3' miRNA: 3'- gaUGCUGGUa-------CGGGu------------CUGAGUAGAGU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 135648 | 0.69 | 0.935523 |
Target: 5'- --cCGGCCGUGCUCuGACUCAuaUUUCc -3' miRNA: 3'- gauGCUGGUACGGGuCUGAGU--AGAGu -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 141062 | 0.72 | 0.815895 |
Target: 5'- -aACGugCggGUGCCCuGGCUCAaguUCUCAu -3' miRNA: 3'- gaUGCugG--UACGGGuCUGAGU---AGAGU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 148175 | 0.73 | 0.769705 |
Target: 5'- uCUACGGCCAUGCCCAcgugCGUC-CAg -3' miRNA: 3'- -GAUGCUGGUACGGGUcugaGUAGaGU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 149841 | 0.66 | 0.984946 |
Target: 5'- -gGCGGCCAggGCCUcGGCgaagcgcagCGUCUCGc -3' miRNA: 3'- gaUGCUGGUa-CGGGuCUGa--------GUAGAGU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 160935 | 0.69 | 0.921641 |
Target: 5'- cCUGCGugagguaaguaggucGCCAUGgCCAGGCUUuucgCUCAg -3' miRNA: 3'- -GAUGC---------------UGGUACgGGUCUGAGua--GAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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