Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29024 | 5' | -52.6 | NC_006146.1 | + | 57994 | 0.68 | 0.953624 |
Target: 5'- aUAgGACgA-GCCCAGACUUuggCUCAa -3' miRNA: 3'- gAUgCUGgUaCGGGUCUGAGua-GAGU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 135648 | 0.69 | 0.935523 |
Target: 5'- --cCGGCCGUGCUCuGACUCAuaUUUCc -3' miRNA: 3'- gauGCUGGUACGGGuCUGAGU--AGAGu -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 49864 | 0.7 | 0.900961 |
Target: 5'- uUACGGCCcaguAUGUCCAGGCggGUCUUg -3' miRNA: 3'- gAUGCUGG----UACGGGUCUGagUAGAGu -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 49760 | 0.71 | 0.841599 |
Target: 5'- -cGCGGCCcagGCCCAGACgccggcugaugUGUCUCAg -3' miRNA: 3'- gaUGCUGGua-CGGGUCUGa----------GUAGAGU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 7692 | 0.72 | 0.797877 |
Target: 5'- cCUACGGCC-UGCCCGG-CUCcUCUgAg -3' miRNA: 3'- -GAUGCUGGuACGGGUCuGAGuAGAgU- -5' |
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29024 | 5' | -52.6 | NC_006146.1 | + | 75772 | 0.66 | 0.984946 |
Target: 5'- -gGCgGACCAaGCCCAGgggGCUCuacucgggcGUCUCGg -3' miRNA: 3'- gaUG-CUGGUaCGGGUC---UGAG---------UAGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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