miRNA display CGI


Results 21 - 40 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 170655 0.74 0.488616
Target:  5'- gUGGcGCGCAGAucgGCgcgggggaggCCAggGGCGCCCCg -3'
miRNA:   3'- -ACC-CGCGUCU---UGa---------GGUagUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 110010 0.74 0.488616
Target:  5'- gGGGCcuCAGGGCUCCGUCcugaucaaagAugGCCUCg -3'
miRNA:   3'- aCCCGc-GUCUUGAGGUAG----------UugCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 55290 0.73 0.527029
Target:  5'- aUGGGCauccacacGCAGGACUUCuUCAGCGUcuuCCCg -3'
miRNA:   3'- -ACCCG--------CGUCUUGAGGuAGUUGCG---GGG- -5'
29028 5' -56.5 NC_006146.1 + 118964 0.73 0.535831
Target:  5'- uUGGcGCGCAGAccgcaccggggccGC-CCGUCggUGCCUCg -3'
miRNA:   3'- -ACC-CGCGUCU-------------UGaGGUAGuuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 103110 0.73 0.556561
Target:  5'- cGGG-GCAGAGCcuggccgCCGUC-ACGUCCCu -3'
miRNA:   3'- aCCCgCGUCUUGa------GGUAGuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 99914 0.73 0.556561
Target:  5'- cGGGCGCAagagcGGGCUCCGggUCGcAC-CCCCg -3'
miRNA:   3'- aCCCGCGU-----CUUGAGGU--AGU-UGcGGGG- -5'
29028 5' -56.5 NC_006146.1 + 42564 0.73 0.566515
Target:  5'- gGGGCGCuGAAUUCUuUCAA-GCCCa -3'
miRNA:   3'- aCCCGCGuCUUGAGGuAGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 93934 0.73 0.566515
Target:  5'- gGcGGCgGCGGGGCUCCGcUCucCGUCCCa -3'
miRNA:   3'- aC-CCG-CGUCUUGAGGU-AGuuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 47880 0.72 0.576513
Target:  5'- cUGGGcCGCcucGGcCUCgGUCAGCGCUCCg -3'
miRNA:   3'- -ACCC-GCGu--CUuGAGgUAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 42684 0.72 0.576513
Target:  5'- gUGGGCugccugaggcugGCAGAGC-CCccCAGCGCCCg -3'
miRNA:   3'- -ACCCG------------CGUCUUGaGGuaGUUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 13973 0.72 0.586551
Target:  5'- ----aGCGGAGC-CCGUCAGCGCCgCCa -3'
miRNA:   3'- acccgCGUCUUGaGGUAGUUGCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 110509 0.72 0.586551
Target:  5'- aGGGUGCAGAuguuCUCCA--GGCGCUgCa -3'
miRNA:   3'- aCCCGCGUCUu---GAGGUagUUGCGGgG- -5'
29028 5' -56.5 NC_006146.1 + 84377 0.72 0.596621
Target:  5'- -aGGCGUGGAccggGCggCCAUCAugGCCuCCg -3'
miRNA:   3'- acCCGCGUCU----UGa-GGUAGUugCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 47546 0.72 0.596621
Target:  5'- cGGccaGCGcCAGAGCUCCcUCGGCGagaCCCCu -3'
miRNA:   3'- aCC---CGC-GUCUUGAGGuAGUUGC---GGGG- -5'
29028 5' -56.5 NC_006146.1 + 41632 0.72 0.596621
Target:  5'- cGGGCGCAGAccaGCcCCA-CAucccugacccucGCGCCUCa -3'
miRNA:   3'- aCCCGCGUCU---UGaGGUaGU------------UGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 15342 0.72 0.606717
Target:  5'- cGGGCGCcccgcgcGAGC-CCGgcucCAACGCCCUc -3'
miRNA:   3'- aCCCGCGu------CUUGaGGUa---GUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 44279 0.72 0.616831
Target:  5'- aGGGCuGCAGAGCUaCCA-CAACGCa-- -3'
miRNA:   3'- aCCCG-CGUCUUGA-GGUaGUUGCGggg -5'
29028 5' -56.5 NC_006146.1 + 113600 0.72 0.616831
Target:  5'- cGGGuCGcCAGucuCUCCGUCGccUGCCCCg -3'
miRNA:   3'- aCCC-GC-GUCuu-GAGGUAGUu-GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 58794 0.72 0.626956
Target:  5'- aGGGCaaguuuuguggGCGGGuCUCCAUCAA-GUCCCu -3'
miRNA:   3'- aCCCG-----------CGUCUuGAGGUAGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 44798 0.71 0.635059
Target:  5'- gGGGCGCAGcgucuaauacuggGAcCUCUGUagggggcCGGCGCCCCu -3'
miRNA:   3'- aCCCGCGUC-------------UU-GAGGUA-------GUUGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.