Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29028 | 5' | -56.5 | NC_006146.1 | + | 62235 | 1.12 | 0.00175 |
Target: 5'- cUGGGCGCAGAACUCCAUCAACGCCCCa -3' miRNA: 3'- -ACCCGCGUCUUGAGGUAGUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 16213 | 0.84 | 0.130287 |
Target: 5'- cUGGGCGCAGAccAC-CCAgcagcCAGCGCCCCc -3' miRNA: 3'- -ACCCGCGUCU--UGaGGUa----GUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 130329 | 0.8 | 0.225723 |
Target: 5'- aGGGC-CAGGACcUCAUCAGCGUCCCc -3' miRNA: 3'- aCCCGcGUCUUGaGGUAGUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 50289 | 0.8 | 0.248446 |
Target: 5'- gGGGCGCAGGAgaUCUGUCAgGCGCCgCCg -3' miRNA: 3'- aCCCGCGUCUUg-AGGUAGU-UGCGG-GG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 100722 | 0.78 | 0.305056 |
Target: 5'- gUGGGUGUGGGACcggccucgccggCCAcCAGCGCCCCg -3' miRNA: 3'- -ACCCGCGUCUUGa-----------GGUaGUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 53632 | 0.78 | 0.320672 |
Target: 5'- cGGGUcggcaggaucGCGGGGCUCaGUCAGCGCCCg -3' miRNA: 3'- aCCCG----------CGUCUUGAGgUAGUUGCGGGg -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 8532 | 0.77 | 0.335381 |
Target: 5'- cGGGCGCgccaaGGGGCUCCAUCuccaaGGCGCUCa -3' miRNA: 3'- aCCCGCG-----UCUUGAGGUAG-----UUGCGGGg -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 44178 | 0.76 | 0.390665 |
Target: 5'- cUGGGCGguGccCUCCAgccUCuGCGCCCUg -3' miRNA: 3'- -ACCCGCguCuuGAGGU---AGuUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 68197 | 0.76 | 0.407517 |
Target: 5'- cGGGCGCAGcGGCUCCGggaggucaGACGCUUCu -3' miRNA: 3'- aCCCGCGUC-UUGAGGUag------UUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 24367 | 0.75 | 0.416112 |
Target: 5'- aGuGGCGCAGGgccaGCUCCAgggcgCGGCGCCUUc -3' miRNA: 3'- aC-CCGCGUCU----UGAGGUa----GUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 129137 | 0.75 | 0.424817 |
Target: 5'- cGGGCGCAGGGcCUCCggCGGgaaGCCCa -3' miRNA: 3'- aCCCGCGUCUU-GAGGuaGUUg--CGGGg -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 169374 | 0.75 | 0.442548 |
Target: 5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3' miRNA: 3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 168442 | 0.75 | 0.442548 |
Target: 5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3' miRNA: 3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 170305 | 0.75 | 0.442548 |
Target: 5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3' miRNA: 3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 167510 | 0.75 | 0.442548 |
Target: 5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3' miRNA: 3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 7944 | 0.75 | 0.451569 |
Target: 5'- gGGGCGCccgccAACUCCGaugcCAACGUCCCa -3' miRNA: 3'- aCCCGCGuc---UUGAGGUa---GUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 121886 | 0.75 | 0.451569 |
Target: 5'- cGGGCGuCAGGuCcCCAagcugggCAACGCCCCa -3' miRNA: 3'- aCCCGC-GUCUuGaGGUa------GUUGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 83521 | 0.74 | 0.479216 |
Target: 5'- -uGGCGCAGggUUCUgAUCAGgGCCCa -3' miRNA: 3'- acCCGCGUCuuGAGG-UAGUUgCGGGg -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 123816 | 0.74 | 0.479216 |
Target: 5'- -cGGCGCAGcccaccguCUUCGUCAgGCGCCCCc -3' miRNA: 3'- acCCGCGUCuu------GAGGUAGU-UGCGGGG- -5' |
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29028 | 5' | -56.5 | NC_006146.1 | + | 127662 | 0.74 | 0.485787 |
Target: 5'- gUGGGCuaucugcugcuccaGgGGGGCUCCucucaccagCAGCGCCCCa -3' miRNA: 3'- -ACCCG--------------CgUCUUGAGGua-------GUUGCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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