miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 69081 0.66 0.919113
Target:  5'- cGGGCcccGCcGAACUCguCGUCGA-GCCCUc -3'
miRNA:   3'- aCCCG---CGuCUUGAG--GUAGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 84171 0.66 0.901266
Target:  5'- cGGGCcgagaaugccgGUAGcgaugcuuGCUCCAUCgcgUGCCCCa -3'
miRNA:   3'- aCCCG-----------CGUCu-------UGAGGUAGuu-GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 3277 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 2345 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 1413 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 482 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 6439 0.66 0.894858
Target:  5'- gUGGGCcCuGGGgUCCAUgGG-GCCCCa -3'
miRNA:   3'- -ACCCGcGuCUUgAGGUAgUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 136340 0.66 0.894205
Target:  5'- gGGGCGCAGAACcucccccUCCugguUUAAC-CCUa -3'
miRNA:   3'- aCCCGCGUCUUG-------AGGu---AGUUGcGGGg -5'
29028 5' -56.5 NC_006146.1 + 19217 0.66 0.894205
Target:  5'- aGGGC-CuGGACguggaguuugccgUCC-UCAACGCCCUc -3'
miRNA:   3'- aCCCGcGuCUUG-------------AGGuAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 123114 0.66 0.901266
Target:  5'- gUGGGCGCuagacGGGGCUUUca-GACGgCCCu -3'
miRNA:   3'- -ACCCGCG-----UCUUGAGGuagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 118027 0.66 0.901266
Target:  5'- gGGGCGCGcGAGgaCCA-CGGaccuggaGCCCCc -3'
miRNA:   3'- aCCCGCGU-CUUgaGGUaGUUg------CGGGG- -5'
29028 5' -56.5 NC_006146.1 + 130960 0.66 0.901266
Target:  5'- gGGGUgcugGCGGAACUCCAgaGAUGgaggaguuuguCCCCu -3'
miRNA:   3'- aCCCG----CGUCUUGAGGUagUUGC-----------GGGG- -5'
29028 5' -56.5 NC_006146.1 + 41500 0.66 0.919113
Target:  5'- gGGGUGCgcgGGGACgacgcCCGgcuGACGCCCg -3'
miRNA:   3'- aCCCGCG---UCUUGa----GGUag-UUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 125217 0.66 0.913396
Target:  5'- cGGGCGCucAGAGC-CCuUC--CGCUCCc -3'
miRNA:   3'- aCCCGCG--UCUUGaGGuAGuuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 232 0.66 0.913396
Target:  5'- gGGGCGCcccuGGcCUCCcccgcgccgAUCuGCGCgCCCa -3'
miRNA:   3'- aCCCGCGu---CUuGAGG---------UAGuUGCG-GGG- -5'
29028 5' -56.5 NC_006146.1 + 123466 0.66 0.907446
Target:  5'- -uGGCcCAGAACUCCAUgGACGgCa- -3'
miRNA:   3'- acCCGcGUCUUGAGGUAgUUGCgGgg -5'
29028 5' -56.5 NC_006146.1 + 167754 0.66 0.907446
Target:  5'- aGGGCGCAGGGg-CCGggugggcgcgCAugGCUCg -3'
miRNA:   3'- aCCCGCGUCUUgaGGUa---------GUugCGGGg -5'
29028 5' -56.5 NC_006146.1 + 43900 0.66 0.907446
Target:  5'- cUGGGagcccaCAGAGCUCCGggaccgCGuCGCCCg -3'
miRNA:   3'- -ACCCgc----GUCUUGAGGUa-----GUuGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 71057 0.66 0.906838
Target:  5'- --cGCGCGGGgacgucuucaccuAUUCCAcCGAgGCCCCg -3'
miRNA:   3'- accCGCGUCU-------------UGAGGUaGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 63360 0.66 0.903765
Target:  5'- cUGGGCaCAGGGCccUCCuggggcUCAuguuuaaaccagaggACGCCCCc -3'
miRNA:   3'- -ACCCGcGUCUUG--AGGu-----AGU---------------UGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.