miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 232 0.66 0.913396
Target:  5'- gGGGCGCcccuGGcCUCCcccgcgccgAUCuGCGCgCCCa -3'
miRNA:   3'- aCCCGCGu---CUuGAGG---------UAGuUGCG-GGG- -5'
29028 5' -56.5 NC_006146.1 + 482 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 592 0.68 0.819187
Target:  5'- gGGGCGCGGcccGGCgCCAgcccUGCCCCc -3'
miRNA:   3'- aCCCGCGUC---UUGaGGUaguuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 1162 0.67 0.851835
Target:  5'- cGGGcCGCcccGGGGCUCCcccgcgccgAUCugAGCGCCCa -3'
miRNA:   3'- aCCC-GCG---UCUUGAGG---------UAG--UUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 1229 0.67 0.881371
Target:  5'- cGGGgGCGGGccacGCgcgCCcgCcACGCCCa -3'
miRNA:   3'- aCCCgCGUCU----UGa--GGuaGuUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 1413 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 1523 0.68 0.819187
Target:  5'- gGGGCGCGGcccGGCgCCAgcccUGCCCCc -3'
miRNA:   3'- aCCCGCGUC---UUGaGGUaguuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 2094 0.67 0.851835
Target:  5'- cGGGcCGCcccGGGGCUCCcccgcgccgAUCugAGCGCCCa -3'
miRNA:   3'- aCCC-GCG---UCUUGAGG---------UAG--UUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 2161 0.67 0.881371
Target:  5'- cGGGgGCGGGccacGCgcgCCcgCcACGCCCa -3'
miRNA:   3'- aCCCgCGUCU----UGa--GGuaGuUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 2345 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 2455 0.68 0.819187
Target:  5'- gGGGCGCGGcccGGCgCCAgcccUGCCCCc -3'
miRNA:   3'- aCCCGCGUC---UUGaGGUaguuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 3026 0.67 0.851835
Target:  5'- cGGGcCGCcccGGGGCUCCcccgcgccgAUCugAGCGCCCa -3'
miRNA:   3'- aCCC-GCG---UCUUGAGG---------UAG--UUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 3093 0.67 0.881371
Target:  5'- cGGGgGCGGGccacGCgcgCCcgCcACGCCCa -3'
miRNA:   3'- aCCCgCGUCU----UGa--GGuaGuUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 3277 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 3387 0.68 0.819187
Target:  5'- gGGGCGCGGcccGGCgCCAgcccUGCCCCc -3'
miRNA:   3'- aCCCGCGUC---UUGaGGUaguuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 3465 0.69 0.765392
Target:  5'- gGGGgGCuaAACUUCGUCAACGaccuggcuucCCCCg -3'
miRNA:   3'- aCCCgCGucUUGAGGUAGUUGC----------GGGG- -5'
29028 5' -56.5 NC_006146.1 + 6439 0.66 0.894858
Target:  5'- gUGGGCcCuGGGgUCCAUgGG-GCCCCa -3'
miRNA:   3'- -ACCCGcGuCUUgAGGUAgUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 7944 0.75 0.451569
Target:  5'- gGGGCGCccgccAACUCCGaugcCAACGUCCCa -3'
miRNA:   3'- aCCCGCGuc---UUGAGGUa---GUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 8532 0.77 0.335381
Target:  5'- cGGGCGCgccaaGGGGCUCCAUCuccaaGGCGCUCa -3'
miRNA:   3'- aCCCGCG-----UCUUGAGGUAG-----UUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 9463 0.71 0.657325
Target:  5'- gUGGGCGCGGGG-UCC----GCGCCCUc -3'
miRNA:   3'- -ACCCGCGUCUUgAGGuaguUGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.