miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 62235 1.12 0.00175
Target:  5'- cUGGGCGCAGAACUCCAUCAACGCCCCa -3'
miRNA:   3'- -ACCCGCGUCUUGAGGUAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 42684 0.72 0.576513
Target:  5'- gUGGGCugccugaggcugGCAGAGC-CCccCAGCGCCCg -3'
miRNA:   3'- -ACCCG------------CGUCUUGaGGuaGUUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 110509 0.72 0.586551
Target:  5'- aGGGUGCAGAuguuCUCCA--GGCGCUgCa -3'
miRNA:   3'- aCCCGCGUCUu---GAGGUagUUGCGGgG- -5'
29028 5' -56.5 NC_006146.1 + 69081 0.66 0.919113
Target:  5'- cGGGCcccGCcGAACUCguCGUCGA-GCCCUc -3'
miRNA:   3'- aCCCG---CGuCUUGAG--GUAGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 68197 0.76 0.407517
Target:  5'- cGGGCGCAGcGGCUCCGggaggucaGACGCUUCu -3'
miRNA:   3'- aCCCGCGUC-UUGAGGUag------UUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 129137 0.75 0.424817
Target:  5'- cGGGCGCAGGGcCUCCggCGGgaaGCCCa -3'
miRNA:   3'- aCCCGCGUCUU-GAGGuaGUUg--CGGGg -5'
29028 5' -56.5 NC_006146.1 + 168442 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 169374 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 127662 0.74 0.485787
Target:  5'- gUGGGCuaucugcugcuccaGgGGGGCUCCucucaccagCAGCGCCCCa -3'
miRNA:   3'- -ACCCG--------------CgUCUUGAGGua-------GUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 42564 0.73 0.566515
Target:  5'- gGGGCGCuGAAUUCUuUCAA-GCCCa -3'
miRNA:   3'- aCCCGCGuCUUGAGGuAGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 110010 0.74 0.488616
Target:  5'- gGGGCcuCAGGGCUCCGUCcugaucaaagAugGCCUCg -3'
miRNA:   3'- aCCCGc-GUCUUGAGGUAG----------UugCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 121886 0.75 0.451569
Target:  5'- cGGGCGuCAGGuCcCCAagcugggCAACGCCCCa -3'
miRNA:   3'- aCCCGC-GUCUuGaGGUa------GUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 130329 0.8 0.225723
Target:  5'- aGGGC-CAGGACcUCAUCAGCGUCCCc -3'
miRNA:   3'- aCCCGcGUCUUGaGGUAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 99914 0.73 0.556561
Target:  5'- cGGGCGCAagagcGGGCUCCGggUCGcAC-CCCCg -3'
miRNA:   3'- aCCCGCGU-----CUUGAGGU--AGU-UGcGGGG- -5'
29028 5' -56.5 NC_006146.1 + 50289 0.8 0.248446
Target:  5'- gGGGCGCAGGAgaUCUGUCAgGCGCCgCCg -3'
miRNA:   3'- aCCCGCGUCUUg-AGGUAGU-UGCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 170305 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 93934 0.73 0.566515
Target:  5'- gGcGGCgGCGGGGCUCCGcUCucCGUCCCa -3'
miRNA:   3'- aC-CCG-CGUCUUGAGGU-AGuuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 47880 0.72 0.576513
Target:  5'- cUGGGcCGCcucGGcCUCgGUCAGCGCUCCg -3'
miRNA:   3'- -ACCC-GCGu--CUuGAGgUAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 53632 0.78 0.320672
Target:  5'- cGGGUcggcaggaucGCGGGGCUCaGUCAGCGCCCg -3'
miRNA:   3'- aCCCG----------CGUCUUGAGgUAGUUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 167510 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.