miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2903 5' -56 NC_001493.1 + 29774 1.15 0.001121
Target:  5'- aGGCGGAGCAGAUCGCGAACCUGCACCg -3'
miRNA:   3'- -CCGCCUCGUCUAGCGCUUGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 36725 0.82 0.172045
Target:  5'- aGGCGGAGCuGAUCGagacauuGGGCCUgGCACCc -3'
miRNA:   3'- -CCGCCUCGuCUAGCg------CUUGGA-CGUGG- -5'
2903 5' -56 NC_001493.1 + 29613 0.78 0.280789
Target:  5'- -aCGGuGCAGGuUCGCGAucugcuccGCCUGCGCCu -3'
miRNA:   3'- ccGCCuCGUCU-AGCGCU--------UGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 92396 0.77 0.337605
Target:  5'- aGGCGGAauuggaGCGGuUCGCGggUUUGCAUCu -3'
miRNA:   3'- -CCGCCU------CGUCuAGCGCuuGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 28860 0.73 0.542404
Target:  5'- cGGUGGucAGCGcuucaaCGCGAGCCUGCaACCg -3'
miRNA:   3'- -CCGCC--UCGUcua---GCGCUUGGACG-UGG- -5'
2903 5' -56 NC_001493.1 + 45512 0.72 0.572549
Target:  5'- aGGCGGAGCGcauuGUCGaUGAACCacuUGaCACCa -3'
miRNA:   3'- -CCGCCUCGUc---UAGC-GCUUGG---AC-GUGG- -5'
2903 5' -56 NC_001493.1 + 55041 0.72 0.572549
Target:  5'- cGGCGGGGCGcuGAcCGUGGGCggCUcGCACCa -3'
miRNA:   3'- -CCGCCUCGU--CUaGCGCUUG--GA-CGUGG- -5'
2903 5' -56 NC_001493.1 + 87548 0.72 0.592869
Target:  5'- cGGUGGuGCcGGUCGCGGGCU--CACCu -3'
miRNA:   3'- -CCGCCuCGuCUAGCGCUUGGacGUGG- -5'
2903 5' -56 NC_001493.1 + 126243 0.71 0.613302
Target:  5'- -cCGGAGaguccCGGAUCGCGAACCggccgcgGuCACCg -3'
miRNA:   3'- ccGCCUC-----GUCUAGCGCUUGGa------C-GUGG- -5'
2903 5' -56 NC_001493.1 + 10689 0.71 0.613302
Target:  5'- -cCGGAGaguccCGGAUCGCGAACCggccgcgGuCACCg -3'
miRNA:   3'- ccGCCUC-----GUCUAGCGCUUGGa------C-GUGG- -5'
2903 5' -56 NC_001493.1 + 81239 0.71 0.613302
Target:  5'- aGGCGaucGAGgAGGUCGUGggUCUGCucguguaacaggGCCg -3'
miRNA:   3'- -CCGC---CUCgUCUAGCGCuuGGACG------------UGG- -5'
2903 5' -56 NC_001493.1 + 72410 0.7 0.674692
Target:  5'- aGGUGGaAGCAGA-CGCGGAUCaUGCucgugaauuacACCa -3'
miRNA:   3'- -CCGCC-UCGUCUaGCGCUUGG-ACG-----------UGG- -5'
2903 5' -56 NC_001493.1 + 3226 0.7 0.684851
Target:  5'- aGGUGGAGuCAGAg-GCGGACgaGgACCc -3'
miRNA:   3'- -CCGCCUC-GUCUagCGCUUGgaCgUGG- -5'
2903 5' -56 NC_001493.1 + 118780 0.7 0.684851
Target:  5'- aGGUGGAGuCAGAg-GCGGACgaGgACCc -3'
miRNA:   3'- -CCGCCUC-GUCUagCGCUUGgaCgUGG- -5'
2903 5' -56 NC_001493.1 + 91432 0.7 0.705029
Target:  5'- gGGUGGGgacgagucuGCAGAUaG-GAACCUGUGCCg -3'
miRNA:   3'- -CCGCCU---------CGUCUAgCgCUUGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 133237 0.7 0.705029
Target:  5'- -aUGGAGCGGuauUCGUGAACCa-CACCu -3'
miRNA:   3'- ccGCCUCGUCu--AGCGCUUGGacGUGG- -5'
2903 5' -56 NC_001493.1 + 17683 0.7 0.71503
Target:  5'- -aUGGAGCGGGuauUCGUGAACCa-CACCu -3'
miRNA:   3'- ccGCCUCGUCU---AGCGCUUGGacGUGG- -5'
2903 5' -56 NC_001493.1 + 87709 0.7 0.724959
Target:  5'- --gGGAGguGAgccCGCG-ACCgGCACCa -3'
miRNA:   3'- ccgCCUCguCUa--GCGCuUGGaCGUGG- -5'
2903 5' -56 NC_001493.1 + 58872 0.7 0.724959
Target:  5'- gGGcCGuGAGCcGGUCGCGAuggcacaucCCUGCGuCCa -3'
miRNA:   3'- -CC-GC-CUCGuCUAGCGCUu--------GGACGU-GG- -5'
2903 5' -56 NC_001493.1 + 102458 0.69 0.734809
Target:  5'- cGGCGGgucGGgGGGUCGCGAcgGCC-GguCCu -3'
miRNA:   3'- -CCGCC---UCgUCUAGCGCU--UGGaCguGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.