miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2903 5' -56 NC_001493.1 + 118507 0.66 0.874172
Target:  5'- cGGCGGGGguGAgguucuUCcCGAGuCCgagguccGCACCg -3'
miRNA:   3'- -CCGCCUCguCU------AGcGCUU-GGa------CGUGG- -5'
2903 5' -56 NC_001493.1 + 28045 0.67 0.835245
Target:  5'- uGCGG-GUGGAUCGacCGGACCggGCgGCCg -3'
miRNA:   3'- cCGCCuCGUCUAGC--GCUUGGa-CG-UGG- -5'
2903 5' -56 NC_001493.1 + 14824 0.67 0.843429
Target:  5'- cGUGGAGCcccgcguGGUCGUGcuggaaGACCUGCucacgGCCg -3'
miRNA:   3'- cCGCCUCGu------CUAGCGC------UUGGACG-----UGG- -5'
2903 5' -56 NC_001493.1 + 130378 0.67 0.843429
Target:  5'- cGUGGAGCcccgcguGGUCGUGcuggaaGACCUGCucacgGCCg -3'
miRNA:   3'- cCGCCUCGu------CUAGCGC------UUGGACG-----UGG- -5'
2903 5' -56 NC_001493.1 + 95604 0.67 0.85142
Target:  5'- gGGCGaGAGaCGGGUgGUGGACCUcC-CCg -3'
miRNA:   3'- -CCGC-CUC-GUCUAgCGCUUGGAcGuGG- -5'
2903 5' -56 NC_001493.1 + 13337 0.67 0.85142
Target:  5'- uGCGGugcucGGCGGGacguguUCGCGcccGACCUGUACg -3'
miRNA:   3'- cCGCC-----UCGUCU------AGCGC---UUGGACGUGg -5'
2903 5' -56 NC_001493.1 + 128891 0.67 0.85142
Target:  5'- uGCGGugcucGGCGGGacguguUCGCGcccGACCUGUACg -3'
miRNA:   3'- cCGCC-----UCGUCU------AGCGC---UUGGACGUGg -5'
2903 5' -56 NC_001493.1 + 51820 0.67 0.866798
Target:  5'- uGGaaaGGAGCg---CGCGAcCCUugGCACCa -3'
miRNA:   3'- -CCg--CCUCGucuaGCGCUuGGA--CGUGG- -5'
2903 5' -56 NC_001493.1 + 2953 0.66 0.874172
Target:  5'- cGGCGGGGguGAgguucuUCcCGAGuCCgagguccGCACCg -3'
miRNA:   3'- -CCGCCUCguCU------AGcGCUU-GGa------CGUGG- -5'
2903 5' -56 NC_001493.1 + 129160 0.68 0.82603
Target:  5'- aGCGGuGCAacGAUCGCGcgGAUCgucggaagaugcgUGCACCu -3'
miRNA:   3'- cCGCCuCGU--CUAGCGC--UUGG-------------ACGUGG- -5'
2903 5' -56 NC_001493.1 + 13606 0.68 0.82603
Target:  5'- aGCGGuGCAacGAUCGCGcgGAUCgucggaagaugcgUGCACCu -3'
miRNA:   3'- cCGCCuCGU--CUAGCGC--UUGG-------------ACGUGG- -5'
2903 5' -56 NC_001493.1 + 45048 0.69 0.773221
Target:  5'- cGGCGGucauGgGGA-CGCGAgauAUUUGCGCCc -3'
miRNA:   3'- -CCGCCu---CgUCUaGCGCU---UGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 92396 0.77 0.337605
Target:  5'- aGGCGGAauuggaGCGGuUCGCGggUUUGCAUCu -3'
miRNA:   3'- -CCGCCU------CGUCuAGCGCuuGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 28860 0.73 0.542404
Target:  5'- cGGUGGucAGCGcuucaaCGCGAGCCUGCaACCg -3'
miRNA:   3'- -CCGCC--UCGUcua---GCGCUUGGACG-UGG- -5'
2903 5' -56 NC_001493.1 + 87548 0.72 0.592869
Target:  5'- cGGUGGuGCcGGUCGCGGGCU--CACCu -3'
miRNA:   3'- -CCGCCuCGuCUAGCGCUUGGacGUGG- -5'
2903 5' -56 NC_001493.1 + 81239 0.71 0.613302
Target:  5'- aGGCGaucGAGgAGGUCGUGggUCUGCucguguaacaggGCCg -3'
miRNA:   3'- -CCGC---CUCgUCUAGCGCuuGGACG------------UGG- -5'
2903 5' -56 NC_001493.1 + 10689 0.71 0.613302
Target:  5'- -cCGGAGaguccCGGAUCGCGAACCggccgcgGuCACCg -3'
miRNA:   3'- ccGCCUC-----GUCUAGCGCUUGGa------C-GUGG- -5'
2903 5' -56 NC_001493.1 + 126243 0.71 0.613302
Target:  5'- -cCGGAGaguccCGGAUCGCGAACCggccgcgGuCACCg -3'
miRNA:   3'- ccGCCUC-----GUCUAGCGCUUGGa------C-GUGG- -5'
2903 5' -56 NC_001493.1 + 91432 0.7 0.705029
Target:  5'- gGGUGGGgacgagucuGCAGAUaG-GAACCUGUGCCg -3'
miRNA:   3'- -CCGCCU---------CGUCUAgCgCUUGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 58872 0.7 0.724959
Target:  5'- gGGcCGuGAGCcGGUCGCGAuggcacaucCCUGCGuCCa -3'
miRNA:   3'- -CC-GC-CUCGuCUAGCGCUu--------GGACGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.