miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2903 5' -56 NC_001493.1 + 2953 0.66 0.874172
Target:  5'- cGGCGGGGguGAgguucuUCcCGAGuCCgagguccGCACCg -3'
miRNA:   3'- -CCGCCUCguCU------AGcGCUU-GGa------CGUGG- -5'
2903 5' -56 NC_001493.1 + 3226 0.7 0.684851
Target:  5'- aGGUGGAGuCAGAg-GCGGACgaGgACCc -3'
miRNA:   3'- -CCGCCUC-GUCUagCGCUUGgaCgUGG- -5'
2903 5' -56 NC_001493.1 + 5548 0.66 0.877061
Target:  5'- aGGUGGGGCucccggacuugggcgGGAggaGCGAGCCgcGgACCg -3'
miRNA:   3'- -CCGCCUCG---------------UCUag-CGCUUGGa-CgUGG- -5'
2903 5' -56 NC_001493.1 + 10689 0.71 0.613302
Target:  5'- -cCGGAGaguccCGGAUCGCGAACCggccgcgGuCACCg -3'
miRNA:   3'- ccGCCUC-----GUCUAGCGCUUGGa------C-GUGG- -5'
2903 5' -56 NC_001493.1 + 11979 0.66 0.880623
Target:  5'- cGCGGGGUucgauacggacagGGGUUGUGAGCguugGUACCg -3'
miRNA:   3'- cCGCCUCG-------------UCUAGCGCUUGga--CGUGG- -5'
2903 5' -56 NC_001493.1 + 13337 0.67 0.85142
Target:  5'- uGCGGugcucGGCGGGacguguUCGCGcccGACCUGUACg -3'
miRNA:   3'- cCGCC-----UCGUCU------AGCGC---UUGGACGUGg -5'
2903 5' -56 NC_001493.1 + 13606 0.68 0.82603
Target:  5'- aGCGGuGCAacGAUCGCGcgGAUCgucggaagaugcgUGCACCu -3'
miRNA:   3'- cCGCCuCGU--CUAGCGC--UUGG-------------ACGUGG- -5'
2903 5' -56 NC_001493.1 + 14824 0.67 0.843429
Target:  5'- cGUGGAGCcccgcguGGUCGUGcuggaaGACCUGCucacgGCCg -3'
miRNA:   3'- cCGCCUCGu------CUAGCGC------UUGGACG-----UGG- -5'
2903 5' -56 NC_001493.1 + 15869 0.66 0.894973
Target:  5'- cGgGGAGCGG-UCGCacGGCCgUGCGCa -3'
miRNA:   3'- cCgCCUCGUCuAGCGc-UUGG-ACGUGg -5'
2903 5' -56 NC_001493.1 + 17683 0.7 0.71503
Target:  5'- -aUGGAGCGGGuauUCGUGAACCa-CACCu -3'
miRNA:   3'- ccGCCUCGUCU---AGCGCUUGGacGUGG- -5'
2903 5' -56 NC_001493.1 + 27778 0.68 0.826876
Target:  5'- -uCGGGGCcGAUCcCGAGCCcGCGCg -3'
miRNA:   3'- ccGCCUCGuCUAGcGCUUGGaCGUGg -5'
2903 5' -56 NC_001493.1 + 28045 0.67 0.835245
Target:  5'- uGCGG-GUGGAUCGacCGGACCggGCgGCCg -3'
miRNA:   3'- cCGCCuCGUCUAGC--GCUUGGa-CG-UGG- -5'
2903 5' -56 NC_001493.1 + 28860 0.73 0.542404
Target:  5'- cGGUGGucAGCGcuucaaCGCGAGCCUGCaACCg -3'
miRNA:   3'- -CCGCC--UCGUcua---GCGCUUGGACG-UGG- -5'
2903 5' -56 NC_001493.1 + 29613 0.78 0.280789
Target:  5'- -aCGGuGCAGGuUCGCGAucugcuccGCCUGCGCCu -3'
miRNA:   3'- ccGCCuCGUCU-AGCGCU--------UGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 29774 1.15 0.001121
Target:  5'- aGGCGGAGCAGAUCGCGAACCUGCACCg -3'
miRNA:   3'- -CCGCCUCGUCUAGCGCUUGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 31810 0.66 0.881329
Target:  5'- cGGUGGucGCGGugaggaaCGCGGAUCgGUACCu -3'
miRNA:   3'- -CCGCCu-CGUCua-----GCGCUUGGaCGUGG- -5'
2903 5' -56 NC_001493.1 + 36725 0.82 0.172045
Target:  5'- aGGCGGAGCuGAUCGagacauuGGGCCUgGCACCc -3'
miRNA:   3'- -CCGCCUCGuCUAGCg------CUUGGA-CGUGG- -5'
2903 5' -56 NC_001493.1 + 37033 0.69 0.74457
Target:  5'- cGGCGGGGCGGAcCGCcagcGACCacaacgGC-CCg -3'
miRNA:   3'- -CCGCCUCGUCUaGCGc---UUGGa-----CGuGG- -5'
2903 5' -56 NC_001493.1 + 40454 0.66 0.901451
Target:  5'- --aGGAGCuGGAcCGCGAcgauaccgcacGCCuggUGCACCg -3'
miRNA:   3'- ccgCCUCG-UCUaGCGCU-----------UGG---ACGUGG- -5'
2903 5' -56 NC_001493.1 + 45048 0.69 0.773221
Target:  5'- cGGCGGucauGgGGA-CGCGAgauAUUUGCGCCc -3'
miRNA:   3'- -CCGCCu---CgUCUaGCGCU---UGGACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.