miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 115945 0.72 0.559597
Target:  5'- cGGUaGCGGCgGCGGCGgucGCCCCgcGGGCa -3'
miRNA:   3'- cUCAaCGUCGgUGUUGU---CGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 24048 0.72 0.569701
Target:  5'- gGGGUgacGCGGCCcCGAgcCAGgCCCGGGCu -3'
miRNA:   3'- -CUCAa--CGUCGGuGUU--GUCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 123499 0.71 0.57985
Target:  5'- uGAGgcugGCccuGGCCACGGuCGaCCCCAGGCg -3'
miRNA:   3'- -CUCaa--CG---UCGGUGUU-GUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 65909 0.71 0.596163
Target:  5'- aGAGUUGagugucuccccagAGCCcccuCGGgAGCCCCAGGCc -3'
miRNA:   3'- -CUCAACg------------UCGGu---GUUgUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 34094 0.71 0.600253
Target:  5'- cGGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3'
miRNA:   3'- -CUCaaCGUCGGUGUUGu------CGGGG------UCCg -5'
29042 3' -56.7 NC_006146.1 + 158040 0.71 0.600253
Target:  5'- ---cUGCccAGCCACccAGCcucGCCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUG--UUGu--CGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 72190 0.71 0.621778
Target:  5'- cGAGgacgcgGCGGCCGgaugggcgggagacCAGCGGCCCCacccacugcgcgugaAGGCa -3'
miRNA:   3'- -CUCaa----CGUCGGU--------------GUUGUCGGGG---------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 123264 0.71 0.631017
Target:  5'- cGGGccGCGGCCAgaGACGGCUCguGGCc -3'
miRNA:   3'- -CUCaaCGUCGGUg-UUGUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 39821 0.71 0.631017
Target:  5'- -cGUUGaCGGCC-CGGCGGCCUC-GGCc -3'
miRNA:   3'- cuCAAC-GUCGGuGUUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 13071 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 28461 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 22305 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 16149 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 19227 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 25383 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 84391 0.7 0.641284
Target:  5'- cAGUUGCcccucaAGCC-CAGCuGCCCCucaAGGCc -3'
miRNA:   3'- cUCAACG------UCGGuGUUGuCGGGG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 117875 0.7 0.651543
Target:  5'- cGGcgGCGGCCGCGGCcagccgcgugaGGCCCaGGGCc -3'
miRNA:   3'- cUCaaCGUCGGUGUUG-----------UCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 95349 0.7 0.660763
Target:  5'- ----cGCGGCCACggUuguGGCCCCcguuaccAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuuG---UCGGGG-------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 139055 0.7 0.661787
Target:  5'- cGGGUaacugGCGGCCACcauACGGgCCCugguGGCg -3'
miRNA:   3'- -CUCAa----CGUCGGUGu--UGUCgGGGu---CCG- -5'
29042 3' -56.7 NC_006146.1 + 130477 0.7 0.672007
Target:  5'- ----cGgGGCCGCuGCcGCCCCGGGUg -3'
miRNA:   3'- cucaaCgUCGGUGuUGuCGGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.