miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 34081 0.68 0.481156
Target:  5'- -gGGCCGgggguCCCGGggggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa------GGUGC-GGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 119260 0.68 0.481156
Target:  5'- cUGGCCcCCUGGgagUCCAgaGCCUggAGCACa -3'
miRNA:   3'- uACCGGcGGGCC---AGGUg-CGGA--UCGUG- -5'
29047 3' -63 NC_006146.1 + 47783 0.68 0.481156
Target:  5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3'
miRNA:   3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 50354 0.68 0.490307
Target:  5'- -cGGCCaGCCUGGggaUCUugGCC-AGCAg -3'
miRNA:   3'- uaCCGG-CGGGCC---AGGugCGGaUCGUg -5'
29047 3' -63 NC_006146.1 + 165954 0.68 0.490307
Target:  5'- cGUGGCC-CCUGGUCCccgGgGCacagAGCACg -3'
miRNA:   3'- -UACCGGcGGGCCAGG---UgCGga--UCGUG- -5'
29047 3' -63 NC_006146.1 + 96649 0.68 0.490307
Target:  5'- uUGGCCaGCCCGGggagacggCCGCGCagGGCc- -3'
miRNA:   3'- uACCGG-CGGGCCa-------GGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 33359 0.67 0.499538
Target:  5'- gGUGGCCGCCggugGGUCCGCcggGCCgcuGCc- -3'
miRNA:   3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5'
29047 3' -63 NC_006146.1 + 33237 0.67 0.499538
Target:  5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3'
miRNA:   3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5'
29047 3' -63 NC_006146.1 + 33974 0.67 0.499538
Target:  5'- cGUGGuCCGCUgGGUCCGCugguCCgguGCACc -3'
miRNA:   3'- -UACC-GGCGGgCCAGGUGc---GGau-CGUG- -5'
29047 3' -63 NC_006146.1 + 105377 0.67 0.508846
Target:  5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3'
miRNA:   3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 70150 0.67 0.508846
Target:  5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3'
miRNA:   3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 94648 0.67 0.508846
Target:  5'- gAUGGCCGCCCuGGggaCCACGa--AGCGg -3'
miRNA:   3'- -UACCGGCGGG-CCa--GGUGCggaUCGUg -5'
29047 3' -63 NC_006146.1 + 55475 0.67 0.512589
Target:  5'- gAUGGCCgcgggcgagaacgagGCCCGGccgCCAgcUGCCUccuGCACg -3'
miRNA:   3'- -UACCGG---------------CGGGCCa--GGU--GCGGAu--CGUG- -5'
29047 3' -63 NC_006146.1 + 20943 0.67 0.518226
Target:  5'- cUGGCC-CCCacucCCACGCCUGGgCGCc -3'
miRNA:   3'- uACCGGcGGGcca-GGUGCGGAUC-GUG- -5'
29047 3' -63 NC_006146.1 + 124781 0.67 0.518226
Target:  5'- -cGGCCaggGCCCGGg-CAUGCCUGcugcugcucGCGCg -3'
miRNA:   3'- uaCCGG---CGGGCCagGUGCGGAU---------CGUG- -5'
29047 3' -63 NC_006146.1 + 125330 0.67 0.518226
Target:  5'- -aGGCCGCCUGG-CUGCGCg-AGCu- -3'
miRNA:   3'- uaCCGGCGGGCCaGGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 33433 0.67 0.518226
Target:  5'- --cGCCGCUCGGUCCugGggcuCCggguGCACc -3'
miRNA:   3'- uacCGGCGGGCCAGGugC----GGau--CGUG- -5'
29047 3' -63 NC_006146.1 + 44586 0.67 0.518226
Target:  5'- cUGGCC-CCCGGgCCGCuGCCUuucccguuGCAUg -3'
miRNA:   3'- uACCGGcGGGCCaGGUG-CGGAu-------CGUG- -5'
29047 3' -63 NC_006146.1 + 87587 0.67 0.524832
Target:  5'- aAUGGCC-UCaGGUCCGagcgaggaacccugUGCCUGGCGCg -3'
miRNA:   3'- -UACCGGcGGgCCAGGU--------------GCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 115661 0.67 0.527674
Target:  5'- -gGGCCGCCCGGgCgACGUaccugAGgGCg -3'
miRNA:   3'- uaCCGGCGGGCCaGgUGCGga---UCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.