miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29052 3' -52.6 NC_006146.1 + 92567 0.96 0.048545
Target:  5'- gGUCUCAGACCUCUcaGUCAACCCAGGa -3'
miRNA:   3'- -CAGAGUCUGGAGAugCAGUUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 45946 0.75 0.695738
Target:  5'- gGUCUCucuggGGACCUCgACGcUCucuGCCCGGGg -3'
miRNA:   3'- -CAGAG-----UCUGGAGaUGC-AGu--UGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 67726 0.74 0.725961
Target:  5'- uGUCUCuGGACCUgUGCGUCAACguggagucaCGGGg -3'
miRNA:   3'- -CAGAG-UCUGGAgAUGCAGUUGg--------GUCC- -5'
29052 3' -52.6 NC_006146.1 + 71529 0.72 0.836904
Target:  5'- -gCUCcuGGGCCUCaACGcgCGGCCCGGGc -3'
miRNA:   3'- caGAG--UCUGGAGaUGCa-GUUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 73029 0.71 0.868542
Target:  5'- -gCUCAGGCC-CU-CGUuccaCGGCCCGGGg -3'
miRNA:   3'- caGAGUCUGGaGAuGCA----GUUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 166734 0.7 0.90192
Target:  5'- cGUCUCGGggcaggaggccgaGCCg-UACGUCAgcuucacGCCCAGGu -3'
miRNA:   3'- -CAGAGUC-------------UGGagAUGCAGU-------UGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 131199 0.7 0.905716
Target:  5'- ---gCAGGCCUCUGCcUCcggagcggcgcugcaGGCCCAGGa -3'
miRNA:   3'- cagaGUCUGGAGAUGcAG---------------UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 93144 0.69 0.931927
Target:  5'- -gCUCgcuaGGGCCUCUGCGgCAcuAUCCGGGu -3'
miRNA:   3'- caGAG----UCUGGAGAUGCaGU--UGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 95724 0.69 0.931927
Target:  5'- ---cCAGACCaUCUACGcCAaccuacguaACCCGGGa -3'
miRNA:   3'- cagaGUCUGG-AGAUGCaGU---------UGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 168856 0.69 0.936944
Target:  5'- cUCUCGGGCCcucUCUugGcgcugaGGCCUAGGg -3'
miRNA:   3'- cAGAGUCUGG---AGAugCag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 108588 0.69 0.936944
Target:  5'- cGUCUCuGGCCUCgcuggGC-UCu-CCCAGGu -3'
miRNA:   3'- -CAGAGuCUGGAGa----UGcAGuuGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 24150 0.69 0.941719
Target:  5'- -aCUCGG-CCUCUgGCGUCGuccGCCUAGa -3'
miRNA:   3'- caGAGUCuGGAGA-UGCAGU---UGGGUCc -5'
29052 3' -52.6 NC_006146.1 + 54935 0.69 0.946252
Target:  5'- ---gUAGGCCUCgACGUCuGCCCGcGGg -3'
miRNA:   3'- cagaGUCUGGAGaUGCAGuUGGGU-CC- -5'
29052 3' -52.6 NC_006146.1 + 100874 0.68 0.958435
Target:  5'- gGUCUCGGGUCUCacggACcuGUCGGCCUGGGu -3'
miRNA:   3'- -CAGAGUCUGGAGa---UG--CAGUUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 3728 0.68 0.962036
Target:  5'- gGUCUCuggGGGCCgCgugGCccuUCAGCCCGGGg -3'
miRNA:   3'- -CAGAG---UCUGGaGa--UGc--AGUUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 65064 0.67 0.971525
Target:  5'- cUCUUGGcagcGCCUCcggAUGUCGGCCgGGGa -3'
miRNA:   3'- cAGAGUC----UGGAGa--UGCAGUUGGgUCC- -5'
29052 3' -52.6 NC_006146.1 + 121394 0.67 0.974271
Target:  5'- -cCUCGGGCCUCaACGUCcgggagagucuGCCCAu- -3'
miRNA:   3'- caGAGUCUGGAGaUGCAGu----------UGGGUcc -5'
29052 3' -52.6 NC_006146.1 + 164687 0.67 0.976572
Target:  5'- uUCUCAGACCcCUACccggggcgaacgaGUCcuauccucuAAUCCAGGg -3'
miRNA:   3'- cAGAGUCUGGaGAUG-------------CAG---------UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 9154 0.67 0.976818
Target:  5'- -cCUCGGACCUCagcCGcCAccCCCGGGc -3'
miRNA:   3'- caGAGUCUGGAGau-GCaGUu-GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 549 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.