Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29052 | 3' | -52.6 | NC_006146.1 | + | 92567 | 0.96 | 0.048545 |
Target: 5'- gGUCUCAGACCUCUcaGUCAACCCAGGa -3' miRNA: 3'- -CAGAGUCUGGAGAugCAGUUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 99363 | 0.66 | 0.981351 |
Target: 5'- cGUCggcgccCGGGCCgc-GCGUUgaGGCCCAGGa -3' miRNA: 3'- -CAGa-----GUCUGGagaUGCAG--UUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 121394 | 0.67 | 0.974271 |
Target: 5'- -cCUCGGGCCUCaACGUCcgggagagucuGCCCAu- -3' miRNA: 3'- caGAGUCUGGAGaUGCAGu----------UGGGUcc -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 65064 | 0.67 | 0.971525 |
Target: 5'- cUCUUGGcagcGCCUCcggAUGUCGGCCgGGGa -3' miRNA: 3'- cAGAGUC----UGGAGa--UGCAGUUGGgUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 100874 | 0.68 | 0.958435 |
Target: 5'- gGUCUCGGGUCUCacggACcuGUCGGCCUGGGu -3' miRNA: 3'- -CAGAGUCUGGAGa---UG--CAGUUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 54935 | 0.69 | 0.946252 |
Target: 5'- ---gUAGGCCUCgACGUCuGCCCGcGGg -3' miRNA: 3'- cagaGUCUGGAGaUGCAGuUGGGU-CC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 69615 | 0.66 | 0.988385 |
Target: 5'- cGUC-CAGGCC-C-ACGUC--CCCGGGg -3' miRNA: 3'- -CAGaGUCUGGaGaUGCAGuuGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 99123 | 0.67 | 0.979176 |
Target: 5'- -cCUCcGGCCUCagGCGUCu-CCaCAGGg -3' miRNA: 3'- caGAGuCUGGAGa-UGCAGuuGG-GUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 3728 | 0.68 | 0.962036 |
Target: 5'- gGUCUCuggGGGCCgCgugGCccuUCAGCCCGGGg -3' miRNA: 3'- -CAGAG---UCUGGaGa--UGc--AGUUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 95724 | 0.69 | 0.931927 |
Target: 5'- ---cCAGACCaUCUACGcCAaccuacguaACCCGGGa -3' miRNA: 3'- cagaGUCUGG-AGAUGCaGU---------UGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 45946 | 0.75 | 0.695738 |
Target: 5'- gGUCUCucuggGGACCUCgACGcUCucuGCCCGGGg -3' miRNA: 3'- -CAGAG-----UCUGGAGaUGC-AGu--UGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 131199 | 0.7 | 0.905716 |
Target: 5'- ---gCAGGCCUCUGCcUCcggagcggcgcugcaGGCCCAGGa -3' miRNA: 3'- cagaGUCUGGAGAUGcAG---------------UUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 9154 | 0.67 | 0.976818 |
Target: 5'- -cCUCGGACCUCagcCGcCAccCCCGGGc -3' miRNA: 3'- caGAGUCUGGAGau-GCaGUu-GGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 160370 | 0.66 | 0.98686 |
Target: 5'- cGUCUCAGcGCC-CUugG-CAggccGCCCAGu -3' miRNA: 3'- -CAGAGUC-UGGaGAugCaGU----UGGGUCc -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 168856 | 0.69 | 0.936944 |
Target: 5'- cUCUCGGGCCcucUCUugGcgcugaGGCCUAGGg -3' miRNA: 3'- cAGAGUCUGG---AGAugCag----UUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 24150 | 0.69 | 0.941719 |
Target: 5'- -aCUCGG-CCUCUgGCGUCGuccGCCUAGa -3' miRNA: 3'- caGAGUCuGGAGA-UGCAGU---UGGGUCc -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 164687 | 0.67 | 0.976572 |
Target: 5'- uUCUCAGACCcCUACccggggcgaacgaGUCcuauccucuAAUCCAGGg -3' miRNA: 3'- cAGAGUCUGGaGAUG-------------CAG---------UUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 549 | 0.67 | 0.979176 |
Target: 5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3' miRNA: 3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 154803 | 0.66 | 0.98686 |
Target: 5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3' miRNA: 3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 142492 | 0.66 | 0.98686 |
Target: 5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3' miRNA: 3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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