miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29052 3' -52.6 NC_006146.1 + 154803 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 151725 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 148648 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 145570 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 142492 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 14837 0.66 0.985184
Target:  5'- gGUCUCGGGCCcggggCcGCGggaGGCCgAGGg -3'
miRNA:   3'- -CAGAGUCUGGa----GaUGCag-UUGGgUCC- -5'
29052 3' -52.6 NC_006146.1 + 3344 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 2412 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 1480 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 549 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 164687 0.67 0.976572
Target:  5'- uUCUCAGACCcCUACccggggcgaacgaGUCcuauccucuAAUCCAGGg -3'
miRNA:   3'- cAGAGUCUGGaGAUG-------------CAG---------UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 24150 0.69 0.941719
Target:  5'- -aCUCGG-CCUCUgGCGUCGuccGCCUAGa -3'
miRNA:   3'- caGAGUCuGGAGA-UGCAGU---UGGGUCc -5'
29052 3' -52.6 NC_006146.1 + 168856 0.69 0.936944
Target:  5'- cUCUCGGGCCcucUCUugGcgcugaGGCCUAGGg -3'
miRNA:   3'- cAGAGUCUGG---AGAugCag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 108588 0.69 0.936944
Target:  5'- cGUCUCuGGCCUCgcuggGC-UCu-CCCAGGu -3'
miRNA:   3'- -CAGAGuCUGGAGa----UGcAGuuGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 22661 0.66 0.988385
Target:  5'- uUCUCAaccaccGGCCUCUGCauacuGACCCAGa -3'
miRNA:   3'- cAGAGU------CUGGAGAUGcag--UUGGGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.