miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29052 3' -52.6 NC_006146.1 + 3344 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 549 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 1480 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 2412 0.67 0.979176
Target:  5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3'
miRNA:   3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 99363 0.66 0.981351
Target:  5'- cGUCggcgccCGGGCCgc-GCGUUgaGGCCCAGGa -3'
miRNA:   3'- -CAGa-----GUCUGGagaUGCAG--UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 14837 0.66 0.985184
Target:  5'- gGUCUCGGGCCcggggCcGCGggaGGCCgAGGg -3'
miRNA:   3'- -CAGAGUCUGGa----GaUGCag-UUGGgUCC- -5'
29052 3' -52.6 NC_006146.1 + 157881 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 154803 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 151725 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 145570 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 142492 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 160370 0.66 0.98686
Target:  5'- cGUCUCAGcGCC-CUugG-CAggccGCCCAGu -3'
miRNA:   3'- -CAGAGUC-UGGaGAugCaGU----UGGGUCc -5'
29052 3' -52.6 NC_006146.1 + 148648 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 22661 0.66 0.988385
Target:  5'- uUCUCAaccaccGGCCUCUGCauacuGACCCAGa -3'
miRNA:   3'- cAGAGU------CUGGAGAUGcag--UUGGGUCc -5'
29052 3' -52.6 NC_006146.1 + 69615 0.66 0.988385
Target:  5'- cGUC-CAGGCC-C-ACGUC--CCCGGGg -3'
miRNA:   3'- -CAGaGUCUGGaGaUGCAGuuGGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.