miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29052 3' -52.6 NC_006146.1 + 99363 0.66 0.981351
Target:  5'- cGUCggcgccCGGGCCgc-GCGUUgaGGCCCAGGa -3'
miRNA:   3'- -CAGa-----GUCUGGagaUGCAG--UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 100874 0.68 0.958435
Target:  5'- gGUCUCGGGUCUCacggACcuGUCGGCCUGGGu -3'
miRNA:   3'- -CAGAGUCUGGAGa---UG--CAGUUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 108588 0.69 0.936944
Target:  5'- cGUCUCuGGCCUCgcuggGC-UCu-CCCAGGu -3'
miRNA:   3'- -CAGAGuCUGGAGa----UGcAGuuGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 121394 0.67 0.974271
Target:  5'- -cCUCGGGCCUCaACGUCcgggagagucuGCCCAu- -3'
miRNA:   3'- caGAGUCUGGAGaUGCAGu----------UGGGUcc -5'
29052 3' -52.6 NC_006146.1 + 131199 0.7 0.905716
Target:  5'- ---gCAGGCCUCUGCcUCcggagcggcgcugcaGGCCCAGGa -3'
miRNA:   3'- cagaGUCUGGAGAUGcAG---------------UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 142492 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 145570 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 148648 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 151725 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 154803 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 157881 0.66 0.98686
Target:  5'- -gCUCAGA-CUCUGCcagcagaGACCCGGGc -3'
miRNA:   3'- caGAGUCUgGAGAUGcag----UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 160370 0.66 0.98686
Target:  5'- cGUCUCAGcGCC-CUugG-CAggccGCCCAGu -3'
miRNA:   3'- -CAGAGUC-UGGaGAugCaGU----UGGGUCc -5'
29052 3' -52.6 NC_006146.1 + 164687 0.67 0.976572
Target:  5'- uUCUCAGACCcCUACccggggcgaacgaGUCcuauccucuAAUCCAGGg -3'
miRNA:   3'- cAGAGUCUGGaGAUG-------------CAG---------UUGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 166734 0.7 0.90192
Target:  5'- cGUCUCGGggcaggaggccgaGCCg-UACGUCAgcuucacGCCCAGGu -3'
miRNA:   3'- -CAGAGUC-------------UGGagAUGCAGU-------UGGGUCC- -5'
29052 3' -52.6 NC_006146.1 + 168856 0.69 0.936944
Target:  5'- cUCUCGGGCCcucUCUugGcgcugaGGCCUAGGg -3'
miRNA:   3'- cAGAGUCUGG---AGAugCag----UUGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.