Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29052 | 3' | -52.6 | NC_006146.1 | + | 71529 | 0.72 | 0.836904 |
Target: 5'- -gCUCcuGGGCCUCaACGcgCGGCCCGGGc -3' miRNA: 3'- caGAG--UCUGGAGaUGCa-GUUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 69615 | 0.66 | 0.988385 |
Target: 5'- cGUC-CAGGCC-C-ACGUC--CCCGGGg -3' miRNA: 3'- -CAGaGUCUGGaGaUGCAGuuGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 67726 | 0.74 | 0.725961 |
Target: 5'- uGUCUCuGGACCUgUGCGUCAACguggagucaCGGGg -3' miRNA: 3'- -CAGAG-UCUGGAgAUGCAGUUGg--------GUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 65064 | 0.67 | 0.971525 |
Target: 5'- cUCUUGGcagcGCCUCcggAUGUCGGCCgGGGa -3' miRNA: 3'- cAGAGUC----UGGAGa--UGCAGUUGGgUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 54935 | 0.69 | 0.946252 |
Target: 5'- ---gUAGGCCUCgACGUCuGCCCGcGGg -3' miRNA: 3'- cagaGUCUGGAGaUGCAGuUGGGU-CC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 45946 | 0.75 | 0.695738 |
Target: 5'- gGUCUCucuggGGACCUCgACGcUCucuGCCCGGGg -3' miRNA: 3'- -CAGAG-----UCUGGAGaUGC-AGu--UGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 24150 | 0.69 | 0.941719 |
Target: 5'- -aCUCGG-CCUCUgGCGUCGuccGCCUAGa -3' miRNA: 3'- caGAGUCuGGAGA-UGCAGU---UGGGUCc -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 22661 | 0.66 | 0.988385 |
Target: 5'- uUCUCAaccaccGGCCUCUGCauacuGACCCAGa -3' miRNA: 3'- cAGAGU------CUGGAGAUGcag--UUGGGUCc -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 14837 | 0.66 | 0.985184 |
Target: 5'- gGUCUCGGGCCcggggCcGCGggaGGCCgAGGg -3' miRNA: 3'- -CAGAGUCUGGa----GaUGCag-UUGGgUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 9154 | 0.67 | 0.976818 |
Target: 5'- -cCUCGGACCUCagcCGcCAccCCCGGGc -3' miRNA: 3'- caGAGUCUGGAGau-GCaGUu-GGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 3728 | 0.68 | 0.962036 |
Target: 5'- gGUCUCuggGGGCCgCgugGCccuUCAGCCCGGGg -3' miRNA: 3'- -CAGAG---UCUGGaGa--UGc--AGUUGGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 3344 | 0.67 | 0.979176 |
Target: 5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3' miRNA: 3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 2412 | 0.67 | 0.979176 |
Target: 5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3' miRNA: 3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 1480 | 0.67 | 0.979176 |
Target: 5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3' miRNA: 3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5' |
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29052 | 3' | -52.6 | NC_006146.1 | + | 549 | 0.67 | 0.979176 |
Target: 5'- cUCUCcgcGGGCCUCcacACGUgGccuCCCAGGa -3' miRNA: 3'- cAGAG---UCUGGAGa--UGCAgUu--GGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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