miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29052 5' -54.9 NC_006146.1 + 128198 0.66 0.951076
Target:  5'- aGCCcGAGCGGGcGCuGGGGGGcUCUGc -3'
miRNA:   3'- cUGGaCUCGCUC-UGuCUCCUC-AGACu -5'
29052 5' -54.9 NC_006146.1 + 58411 0.66 0.951075
Target:  5'- gGACCgcuaucucuaUGAGCGcGcCGGGGuGGGUCUGGg -3'
miRNA:   3'- -CUGG----------ACUCGCuCuGUCUC-CUCAGACU- -5'
29052 5' -54.9 NC_006146.1 + 166685 0.66 0.951075
Target:  5'- uGGCCUGgcaggGGgGAGACggggcaaugggAGGGGGGUgUGAg -3'
miRNA:   3'- -CUGGAC-----UCgCUCUG-----------UCUCCUCAgACU- -5'
29052 5' -54.9 NC_006146.1 + 58220 0.66 0.951075
Target:  5'- aGACCcGAGauCGAGACcgacauGGAGGuGUUUGAc -3'
miRNA:   3'- -CUGGaCUC--GCUCUG------UCUCCuCAGACU- -5'
29052 5' -54.9 NC_006146.1 + 52515 0.66 0.951075
Target:  5'- aGAUCUGGGCGGGAaAGAGGAc----- -3'
miRNA:   3'- -CUGGACUCGCUCUgUCUCCUcagacu -5'
29052 5' -54.9 NC_006146.1 + 75823 0.66 0.950662
Target:  5'- aGGCCcu-GCGGGACaugcaccAGGGGAGcUCUGGa -3'
miRNA:   3'- -CUGGacuCGCUCUG-------UCUCCUC-AGACU- -5'
29052 5' -54.9 NC_006146.1 + 116400 0.66 0.942354
Target:  5'- ----gGAGCGGGGCccuGGGGAGUCUc- -3'
miRNA:   3'- cuggaCUCGCUCUGu--CUCCUCAGAcu -5'
29052 5' -54.9 NC_006146.1 + 40467 0.66 0.942354
Target:  5'- uGGCCUGgugggugaAGgGGGGCAGAGGGGcCg-- -3'
miRNA:   3'- -CUGGAC--------UCgCUCUGUCUCCUCaGacu -5'
29052 5' -54.9 NC_006146.1 + 107092 0.66 0.942354
Target:  5'- aGGCC-GGGgGAGugGGuGG-GUCUGGg -3'
miRNA:   3'- -CUGGaCUCgCUCugUCuCCuCAGACU- -5'
29052 5' -54.9 NC_006146.1 + 51224 0.66 0.942353
Target:  5'- uGCUUGGG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 99387 0.66 0.937636
Target:  5'- aGGCCcagGAGCGAGucggcCAGGGGGGUg--- -3'
miRNA:   3'- -CUGGa--CUCGCUCu----GUCUCCUCAgacu -5'
29052 5' -54.9 NC_006146.1 + 166128 0.66 0.937151
Target:  5'- aGGCaggGAG-GAGACGGAGGGGgagggacUCUGGg -3'
miRNA:   3'- -CUGga-CUCgCUCUGUCUCCUC-------AGACU- -5'
29052 5' -54.9 NC_006146.1 + 36643 0.66 0.93268
Target:  5'- gGACCUGuGUGaAGGCGcGGGGGuucUCUGAg -3'
miRNA:   3'- -CUGGACuCGC-UCUGUcUCCUC---AGACU- -5'
29052 5' -54.9 NC_006146.1 + 64238 0.67 0.927482
Target:  5'- cGCCUGGGcCGGGGCGgGAGGGGcgUGGc -3'
miRNA:   3'- cUGGACUC-GCUCUGU-CUCCUCagACU- -5'
29052 5' -54.9 NC_006146.1 + 13314 0.67 0.910443
Target:  5'- cGugCUGGGCaccaGGGCGGuGGAGUCg-- -3'
miRNA:   3'- -CugGACUCGc---UCUGUCuCCUCAGacu -5'
29052 5' -54.9 NC_006146.1 + 130954 0.68 0.89394
Target:  5'- gGACCcgGGGUgcuggcggaacuccaGAGAUGGAGGAGUUUGu -3'
miRNA:   3'- -CUGGa-CUCG---------------CUCUGUCUCCUCAGACu -5'
29052 5' -54.9 NC_006146.1 + 89400 0.68 0.891261
Target:  5'- aGCgaUGGG-GGGAUGGAGGAGUUUGAg -3'
miRNA:   3'- cUGg-ACUCgCUCUGUCUCCUCAGACU- -5'
29052 5' -54.9 NC_006146.1 + 51404 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51254 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51284 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.