miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2906 3' -55.2 NC_001493.1 + 32767 1.12 0.00195
Target:  5'- gGAUAUGGCCCCGGACCGUAAACGCCCg -3'
miRNA:   3'- -CUAUACCGGGGCCUGGCAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 111505 0.76 0.395237
Target:  5'- ----gGGUgCCGGACCgGUGAGCGCCa -3'
miRNA:   3'- cuauaCCGgGGCCUGG-CAUUUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 91348 0.75 0.475581
Target:  5'- ----cGGCCCCaugucacGGACCG--GACGCCCc -3'
miRNA:   3'- cuauaCCGGGG-------CCUGGCauUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 15537 0.73 0.555158
Target:  5'- --gGUGGCCCCGGAgggucUCGau-GCGCUCa -3'
miRNA:   3'- cuaUACCGGGGCCU-----GGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 47680 0.73 0.555158
Target:  5'- --gGUGGCCCCGGACCcgaugaaacAGGCGUUCc -3'
miRNA:   3'- cuaUACCGGGGCCUGGca-------UUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 131091 0.73 0.555158
Target:  5'- --gGUGGCCCCGGAgggucUCGau-GCGCUCa -3'
miRNA:   3'- cuaUACCGGGGCCU-----GGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 44322 0.72 0.606211
Target:  5'- ----aGGCCCCGGAaCCGcu--CGUCCg -3'
miRNA:   3'- cuauaCCGGGGCCU-GGCauuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 90449 0.72 0.637134
Target:  5'- uGAUGUGGCUCauGACCccGAGCGCaCCg -3'
miRNA:   3'- -CUAUACCGGGgcCUGGcaUUUGCG-GG- -5'
2906 3' -55.2 NC_001493.1 + 131021 0.72 0.637134
Target:  5'- --gGUGGCCCCgccGGuCCGUuuAUGCCg -3'
miRNA:   3'- cuaUACCGGGG---CCuGGCAuuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 36623 0.72 0.647444
Target:  5'- --gGUGGCCgUgGGGCUGUGggUGUCCa -3'
miRNA:   3'- cuaUACCGG-GgCCUGGCAUuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 34218 0.71 0.682356
Target:  5'- uGAUGgagGGCCgCGGuGCCGgccgcguugaucuGACGCCCg -3'
miRNA:   3'- -CUAUa--CCGGgGCC-UGGCau-----------UUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 126839 0.71 0.698638
Target:  5'- ---cUGGUCCCGGgaGCCcucggucugaguGUGAGCGUCCg -3'
miRNA:   3'- cuauACCGGGGCC--UGG------------CAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 11285 0.71 0.698638
Target:  5'- ---cUGGUCCCGGgaGCCcucggucugaguGUGAGCGUCCg -3'
miRNA:   3'- cuauACCGGGGCC--UGG------------CAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 58719 0.7 0.738625
Target:  5'- ----cGGCCaaCGGACCGUAAcacauGgGCCCu -3'
miRNA:   3'- cuauaCCGGg-GCCUGGCAUU-----UgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 23810 0.7 0.748409
Target:  5'- --aAUGGCauCCCc--CCGUAAACGCCCc -3'
miRNA:   3'- cuaUACCG--GGGccuGGCAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 63230 0.69 0.786417
Target:  5'- --cGUGGUgaccaCCGcACCGgcGACGCCCg -3'
miRNA:   3'- cuaUACCGg----GGCcUGGCauUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 21775 0.69 0.804612
Target:  5'- cGGUAUGGUuuuUCCGGugCG---GCGCCUu -3'
miRNA:   3'- -CUAUACCG---GGGCCugGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 129108 0.69 0.813477
Target:  5'- ------aCCCCGGACCGcgguggAGAgGCCCg -3'
miRNA:   3'- cuauaccGGGGCCUGGCa-----UUUgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 13554 0.69 0.813477
Target:  5'- ------aCCCCGGACCGcgguggAGAgGCCCg -3'
miRNA:   3'- cuauaccGGGGCCUGGCa-----UUUgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 62439 0.69 0.813477
Target:  5'- --cGUGGCcgugCCCGuGGCCGUGcccgUGCCCg -3'
miRNA:   3'- cuaUACCG----GGGC-CUGGCAUuu--GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.