miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2906 3' -55.2 NC_001493.1 + 2844 0.67 0.891678
Target:  5'- --gAUGaCCCCGGGUCGaucGCGCCCu -3'
miRNA:   3'- cuaUACcGGGGCCUGGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 3249 0.66 0.910873
Target:  5'- ----gGGCaCCGG-CCGUGAcgaGCCCg -3'
miRNA:   3'- cuauaCCGgGGCCuGGCAUUug-CGGG- -5'
2906 3' -55.2 NC_001493.1 + 5581 0.66 0.916794
Target:  5'- ------aCCCCGGGCUGgc-GCGCCUg -3'
miRNA:   3'- cuauaccGGGGCCUGGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 11285 0.71 0.698638
Target:  5'- ---cUGGUCCCGGgaGCCcucggucugaguGUGAGCGUCCg -3'
miRNA:   3'- cuauACCGGGGCC--UGG------------CAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 13375 0.67 0.897004
Target:  5'- ----cGGUUCCGGACCGcuccccccuUGCCCc -3'
miRNA:   3'- cuauaCCGGGGCCUGGCauuu-----GCGGG- -5'
2906 3' -55.2 NC_001493.1 + 13554 0.69 0.813477
Target:  5'- ------aCCCCGGACCGcgguggAGAgGCCCg -3'
miRNA:   3'- cuauaccGGGGCCUGGCa-----UUUgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 14547 0.68 0.855128
Target:  5'- ----cGGCggacgaCGGACCGUAuACGCCg -3'
miRNA:   3'- cuauaCCGgg----GCCUGGCAUuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 15465 0.67 0.898312
Target:  5'- ----gGGCCCCgccGGuCCGUuuAUGCCg -3'
miRNA:   3'- cuauaCCGGGG---CCuGGCAuuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 15537 0.73 0.555158
Target:  5'- --gGUGGCCCCGGAgggucUCGau-GCGCUCa -3'
miRNA:   3'- cuaUACCGGGGCCU-----GGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 16767 0.68 0.84718
Target:  5'- cGGUGUGGCaaaCC--GCCGUu--CGCCCg -3'
miRNA:   3'- -CUAUACCGg--GGccUGGCAuuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 18210 0.68 0.830695
Target:  5'- ----aGGCCCCcGACCGcccggGcgUGCCCa -3'
miRNA:   3'- cuauaCCGGGGcCUGGCa----UuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 18555 0.67 0.891678
Target:  5'- -----cGCCCCGuGGCCGUGGACGg-- -3'
miRNA:   3'- cuauacCGGGGC-CUGGCAUUUGCggg -5'
2906 3' -55.2 NC_001493.1 + 18624 0.67 0.898312
Target:  5'- ----gGGCCCCGaguacgacGGCCGcgucGAGCGaCCCg -3'
miRNA:   3'- cuauaCCGGGGC--------CUGGCa---UUUGC-GGG- -5'
2906 3' -55.2 NC_001493.1 + 21775 0.69 0.804612
Target:  5'- cGGUAUGGUuuuUCCGGugCG---GCGCCUu -3'
miRNA:   3'- -CUAUACCG---GGGCCugGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 23810 0.7 0.748409
Target:  5'- --aAUGGCauCCCc--CCGUAAACGCCCc -3'
miRNA:   3'- cuaUACCG--GGGccuGGCAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 29757 0.66 0.910873
Target:  5'- --gGUGGUCCCgaGGGUCGUcu-CGCCCu -3'
miRNA:   3'- cuaUACCGGGG--CCUGGCAuuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 32767 1.12 0.00195
Target:  5'- gGAUAUGGCCCCGGACCGUAAACGCCCg -3'
miRNA:   3'- -CUAUACCGGGGCCUGGCAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 34218 0.71 0.682356
Target:  5'- uGAUGgagGGCCgCGGuGCCGgccgcguugaucuGACGCCCg -3'
miRNA:   3'- -CUAUa--CCGGgGCC-UGGCau-----------UUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 35343 0.68 0.84718
Target:  5'- ----cGaGCCCauGACCGUGGACGUCg -3'
miRNA:   3'- cuauaC-CGGGgcCUGGCAUUUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 36623 0.72 0.647444
Target:  5'- --gGUGGCCgUgGGGCUGUGggUGUCCa -3'
miRNA:   3'- cuaUACCGG-GgCCUGGCAUuuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.