miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2906 3' -55.2 NC_001493.1 + 130101 0.68 0.855128
Target:  5'- ----cGGCggacgaCGGACCGUAuACGCCg -3'
miRNA:   3'- cuauaCCGgg----GCCUGGCAUuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 62439 0.69 0.813477
Target:  5'- --cGUGGCcgugCCCGuGGCCGUGcccgUGCCCg -3'
miRNA:   3'- cuaUACCG----GGGC-CUGGCAUuu--GCGGG- -5'
2906 3' -55.2 NC_001493.1 + 129108 0.69 0.813477
Target:  5'- ------aCCCCGGACCGcgguggAGAgGCCCg -3'
miRNA:   3'- cuauaccGGGGCCUGGCa-----UUUgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 111257 0.68 0.822173
Target:  5'- aGGUAcaggGGCuCCCGGGCuCGUAAACGagUCg -3'
miRNA:   3'- -CUAUa---CCG-GGGCCUG-GCAUUUGCg-GG- -5'
2906 3' -55.2 NC_001493.1 + 112474 0.68 0.822173
Target:  5'- ----cGGUCUCGGACCGgugcCGCuCCa -3'
miRNA:   3'- cuauaCCGGGGCCUGGCauuuGCG-GG- -5'
2906 3' -55.2 NC_001493.1 + 57405 0.68 0.839033
Target:  5'- ----gGGCCCUGuG-UCGUcAGCGCCCu -3'
miRNA:   3'- cuauaCCGGGGC-CuGGCAuUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 107417 0.68 0.846374
Target:  5'- cGUGUGGauuccggccacccCCCCgGGACCGgugucAACGCCg -3'
miRNA:   3'- cUAUACC-------------GGGG-CCUGGCau---UUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 35343 0.68 0.84718
Target:  5'- ----cGaGCCCauGACCGUGGACGUCg -3'
miRNA:   3'- cuauaC-CGGGgcCUGGCAUUUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 14547 0.68 0.855128
Target:  5'- ----cGGCggacgaCGGACCGUAuACGCCg -3'
miRNA:   3'- cuauaCCGgg----GCCUGGCAUuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 13554 0.69 0.813477
Target:  5'- ------aCCCCGGACCGcgguggAGAgGCCCg -3'
miRNA:   3'- cuauaccGGGGCCUGGCa-----UUUgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 52169 0.69 0.813477
Target:  5'- ---uUGGUgCCGGAUUGU-GugGCCCc -3'
miRNA:   3'- cuauACCGgGGCCUGGCAuUugCGGG- -5'
2906 3' -55.2 NC_001493.1 + 79126 0.69 0.813477
Target:  5'- ----aGGUCCUGGACCagcGUGuucGCGUCCg -3'
miRNA:   3'- cuauaCCGGGGCCUGG---CAUu--UGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 15537 0.73 0.555158
Target:  5'- --gGUGGCCCCGGAgggucUCGau-GCGCUCa -3'
miRNA:   3'- cuaUACCGGGGCCU-----GGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 131091 0.73 0.555158
Target:  5'- --gGUGGCCCCGGAgggucUCGau-GCGCUCa -3'
miRNA:   3'- cuaUACCGGGGCCU-----GGCauuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 44322 0.72 0.606211
Target:  5'- ----aGGCCCCGGAaCCGcu--CGUCCg -3'
miRNA:   3'- cuauaCCGGGGCCU-GGCauuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 90449 0.72 0.637134
Target:  5'- uGAUGUGGCUCauGACCccGAGCGCaCCg -3'
miRNA:   3'- -CUAUACCGGGgcCUGGcaUUUGCG-GG- -5'
2906 3' -55.2 NC_001493.1 + 36623 0.72 0.647444
Target:  5'- --gGUGGCCgUgGGGCUGUGggUGUCCa -3'
miRNA:   3'- cuaUACCGG-GgCCUGGCAUuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 34218 0.71 0.682356
Target:  5'- uGAUGgagGGCCgCGGuGCCGgccgcguugaucuGACGCCCg -3'
miRNA:   3'- -CUAUa--CCGGgGCC-UGGCau-----------UUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 58719 0.7 0.738625
Target:  5'- ----cGGCCaaCGGACCGUAAcacauGgGCCCu -3'
miRNA:   3'- cuauaCCGGg-GCCUGGCAUU-----UgCGGG- -5'
2906 3' -55.2 NC_001493.1 + 23810 0.7 0.748409
Target:  5'- --aAUGGCauCCCc--CCGUAAACGCCCc -3'
miRNA:   3'- cuaUACCG--GGGccuGGCAUUUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.