miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2906 5' -63.6 NC_001493.1 + 15486 0.66 0.554683
Target:  5'- -gGAUCGGUgaaUGGagaCCCGGGGCCCCg- -3'
miRNA:   3'- cgCUGGCCAg--GCC---GGGCUCUGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 111661 0.66 0.545136
Target:  5'- aGUGACCGacaCCGGgCgCGAGugCCCg- -3'
miRNA:   3'- -CGCUGGCca-GGCCgG-GCUCugGGGaa -5'
2906 5' -63.6 NC_001493.1 + 50164 0.66 0.545136
Target:  5'- -gGACCaG-CCGGCCCaacuuGAGGCCCgCUUu -3'
miRNA:   3'- cgCUGGcCaGGCCGGG-----CUCUGGG-GAA- -5'
2906 5' -63.6 NC_001493.1 + 106712 0.66 0.535644
Target:  5'- uGUGACgCGGgggggacCCGGgcguauuucccaCCCGAGACCCUg- -3'
miRNA:   3'- -CGCUG-GCCa------GGCC------------GGGCUCUGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 8817 0.66 0.535644
Target:  5'- cGUGGCCcGUCCGuGUCCGc-ACCCCUc -3'
miRNA:   3'- -CGCUGGcCAGGC-CGGGCucUGGGGAa -5'
2906 5' -63.6 NC_001493.1 + 124371 0.66 0.535644
Target:  5'- cGUGGCCcGUCCGuGUCCGc-ACCCCUc -3'
miRNA:   3'- -CGCUGGcCAGGC-CGGGCucUGGGGAa -5'
2906 5' -63.6 NC_001493.1 + 64741 0.66 0.52621
Target:  5'- cGCGACCGGcCCguuGGCCCcguuGAGggucGCCCuCUg -3'
miRNA:   3'- -CGCUGGCCaGG---CCGGG----CUC----UGGG-GAa -5'
2906 5' -63.6 NC_001493.1 + 29127 0.66 0.52621
Target:  5'- cGCGuCCuuuuuGGUCCGGgCCGuGcCCCCg- -3'
miRNA:   3'- -CGCuGG-----CCAGGCCgGGCuCuGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 1491 0.66 0.52621
Target:  5'- -aGGCCGaGgCCGGUacaGAGACCCCa- -3'
miRNA:   3'- cgCUGGC-CaGGCCGgg-CUCUGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 117045 0.66 0.52621
Target:  5'- -aGGCCGaGgCCGGUacaGAGACCCCa- -3'
miRNA:   3'- cgCUGGC-CaGGCCGgg-CUCUGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 114196 0.67 0.483692
Target:  5'- aGC-ACCGGUgcCUGGaacccgcaucuccauCCCGGGACCCCa- -3'
miRNA:   3'- -CGcUGGCCA--GGCC---------------GGGCUCUGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 44023 0.67 0.479168
Target:  5'- gGCuGAUCGGcUCCcccagGGCCCGAaauacccGGCCCCUc -3'
miRNA:   3'- -CG-CUGGCC-AGG-----CCGGGCU-------CUGGGGAa -5'
2906 5' -63.6 NC_001493.1 + 61478 0.67 0.471078
Target:  5'- cGCGGCU-GUUCGGCCgGGGugUCCa- -3'
miRNA:   3'- -CGCUGGcCAGGCCGGgCUCugGGGaa -5'
2906 5' -63.6 NC_001493.1 + 95382 0.68 0.409873
Target:  5'- gGgGACCGGgcgagCCGuggaaucguucauGCuCCGGGACCCCg- -3'
miRNA:   3'- -CgCUGGCCa----GGC-------------CG-GGCUCUGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 32596 0.69 0.391131
Target:  5'- cGCGACCGGgacgggcguuuaCGGUCCGGGGCCa--- -3'
miRNA:   3'- -CGCUGGCCag----------GCCGGGCUCUGGggaa -5'
2906 5' -63.6 NC_001493.1 + 103195 0.69 0.386335
Target:  5'- cGgGACCGGUUCGGaCCCauucGGGuCCCCc- -3'
miRNA:   3'- -CgCUGGCCAGGCC-GGG----CUCuGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 44300 0.69 0.362942
Target:  5'- uGCcACCaucUCCGGCCCGAGcagGCCCCg- -3'
miRNA:   3'- -CGcUGGcc-AGGCCGGGCUC---UGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 90136 0.69 0.355366
Target:  5'- cCGGCCGGUCCGuGCgCGA--CCCCg- -3'
miRNA:   3'- cGCUGGCCAGGC-CGgGCUcuGGGGaa -5'
2906 5' -63.6 NC_001493.1 + 112629 0.72 0.243834
Target:  5'- -gGAgCGGcaCCGGUCCGAGACCgCCUUg -3'
miRNA:   3'- cgCUgGCCa-GGCCGGGCUCUGG-GGAA- -5'
2906 5' -63.6 NC_001493.1 + 126406 0.72 0.243834
Target:  5'- cGCGGCCGGUUCGcGaUCCGGGACUCUc- -3'
miRNA:   3'- -CGCUGGCCAGGC-C-GGGCUCUGGGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.