miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 3' -56.9 NC_006146.1 + 97317 1.09 0.002852
Target:  5'- cCGUGAGCUCGACCGGAGGAGAGGAUGg -3'
miRNA:   3'- -GCACUCGAGCUGGCCUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 70570 0.75 0.45008
Target:  5'- uGUGGGCaUCGugcccguCCGG-GGGGAGGAUGu -3'
miRNA:   3'- gCACUCG-AGCu------GGCCuCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 42051 0.75 0.45008
Target:  5'- gGUGAGCUCGACCcuaGGGAGAuucgcgacaGGGUGa -3'
miRNA:   3'- gCACUCGAGCUGGcc-UCCUCU---------CCUAC- -5'
29064 3' -56.9 NC_006146.1 + 44760 0.74 0.477407
Target:  5'- --cGGGCUC--UCGGGGGAGAGGGUGc -3'
miRNA:   3'- gcaCUCGAGcuGGCCUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 168215 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 167283 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 170079 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 169147 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 156953 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 153875 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 147719 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 150797 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 144642 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 141564 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 117594 0.72 0.603473
Target:  5'- --cGGGCUCGGacuCCGGccaGGGAGAGGAg- -3'
miRNA:   3'- gcaCUCGAGCU---GGCC---UCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 79619 0.71 0.643563
Target:  5'- gGUGAGCUCGucCCGG-GGAcAGGGUc -3'
miRNA:   3'- gCACUCGAGCu-GGCCuCCUcUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 32160 0.7 0.703275
Target:  5'- -aUGGGCUCaGGCaaccguaaGGAGGGGGGGGUa -3'
miRNA:   3'- gcACUCGAG-CUGg-------CCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 112550 0.69 0.742039
Target:  5'- uCG-GAGCUCaGACCcGGGGucguGAGGAUGc -3'
miRNA:   3'- -GCaCUCGAG-CUGGcCUCCu---CUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 149141 0.69 0.750577
Target:  5'- gGUGGGCgggCGGugaaauuCUGGAGGAcggaGAGGGUGg -3'
miRNA:   3'- gCACUCGa--GCU-------GGCCUCCU----CUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 84704 0.69 0.751521
Target:  5'- gGUGucuGGCUCcgaggGACUGGAGGAGgagcucauuaGGGAUGa -3'
miRNA:   3'- gCAC---UCGAG-----CUGGCCUCCUC----------UCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.