miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 3' -56.9 NC_006146.1 + 97317 1.09 0.002852
Target:  5'- cCGUGAGCUCGACCGGAGGAGAGGAUGg -3'
miRNA:   3'- -GCACUCGAGCUGGCCUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135734 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135920 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 170407 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 169147 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 170079 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 149141 0.69 0.750577
Target:  5'- gGUGGGCgggCGGugaaauuCUGGAGGAcggaGAGGGUGg -3'
miRNA:   3'- gCACUCGa--GCU-------GGCCUCCU----CUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 97834 0.69 0.770174
Target:  5'- gGUGaAGUaccaCGACCuGGAGGAGGGGGc- -3'
miRNA:   3'- gCAC-UCGa---GCUGG-CCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 135177 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135642 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135363 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 112094 0.68 0.839399
Target:  5'- aGUGAcauuGCUUGGCuCGGGGGuGGAGG-UGg -3'
miRNA:   3'- gCACU----CGAGCUG-GCCUCC-UCUCCuAC- -5'
29064 3' -56.9 NC_006146.1 + 42051 0.75 0.45008
Target:  5'- gGUGAGCUCGACCcuaGGGAGAuucgcgacaGGGUGa -3'
miRNA:   3'- gCACUCGAGCUGGcc-UCCUCU---------CCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135456 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 167283 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 137593 0.68 0.797246
Target:  5'- --gGAGCUCgGGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAG-CUGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135549 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135827 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 168215 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 79619 0.71 0.643563
Target:  5'- gGUGAGCUCGucCCGG-GGAcAGGGUc -3'
miRNA:   3'- gCACUCGAGCu-GGCCuCCUcUCCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.