Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29064 | 3' | -56.9 | NC_006146.1 | + | 150797 | 0.72 | 0.573593 |
Target: 5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3' miRNA: 3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 39850 | 0.69 | 0.788354 |
Target: 5'- aGUGGGC-CGGCgGGggcugugugcccGGGGGAGGAg- -3' miRNA: 3'- gCACUCGaGCUGgCC------------UCCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 43632 | 0.69 | 0.770174 |
Target: 5'- aGUGGGCggcggggcgUGGCCGccuGGGGAGAGGGg- -3' miRNA: 3'- gCACUCGa--------GCUGGC---CUCCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 84704 | 0.69 | 0.751521 |
Target: 5'- gGUGucuGGCUCcgaggGACUGGAGGAGgagcucauuaGGGAUGa -3' miRNA: 3'- gCAC---UCGAG-----CUGGCCUCCUC----------UCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 112550 | 0.69 | 0.742039 |
Target: 5'- uCG-GAGCUCaGACCcGGGGucguGAGGAUGc -3' miRNA: 3'- -GCaCUCGAG-CUGGcCUCCu---CUCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 32160 | 0.7 | 0.703275 |
Target: 5'- -aUGGGCUCaGGCaaccguaaGGAGGGGGGGGUa -3' miRNA: 3'- gcACUCGAG-CUGg-------CCUCCUCUCCUAc -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 117594 | 0.72 | 0.603473 |
Target: 5'- --cGGGCUCGGacuCCGGccaGGGAGAGGAg- -3' miRNA: 3'- gcaCUCGAGCU---GGCC---UCCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 156953 | 0.72 | 0.573593 |
Target: 5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3' miRNA: 3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 153875 | 0.72 | 0.573593 |
Target: 5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3' miRNA: 3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 39748 | 0.68 | 0.797246 |
Target: 5'- gGUGGGuUUCGGCUGGAGGcuGGGGc- -3' miRNA: 3'- gCACUC-GAGCUGGCCUCCucUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 107081 | 0.68 | 0.797246 |
Target: 5'- --aGAGaaaaugaaGGCCGGGGGAGuGGGUGg -3' miRNA: 3'- gcaCUCgag-----CUGGCCUCCUCuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 103622 | 0.68 | 0.797246 |
Target: 5'- gCG-GAGCUCGcaagcuggcACgCGGAGGAGGGGc-- -3' miRNA: 3'- -GCaCUCGAGC---------UG-GCCUCCUCUCCuac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 57093 | 0.66 | 0.909469 |
Target: 5'- --cGAGCggcgcguccUGGCCaGcGGGGAGAGGGUGg -3' miRNA: 3'- gcaCUCGa--------GCUGG-C-CUCCUCUCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 137181 | 0.66 | 0.902811 |
Target: 5'- cCGgagGAGCUCcagaacggggguaGGCCGGGcacaccccGGGGAGGAa- -3' miRNA: 3'- -GCa--CUCGAG-------------CUGGCCU--------CCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136994 | 0.66 | 0.902811 |
Target: 5'- cCGgagGAGCUCcaggacggggguaGGCCGGGcacaccccGGGGAGGAg- -3' miRNA: 3'- -GCa--CUCGAG-------------CUGGCCU--------CCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 72017 | 0.67 | 0.877046 |
Target: 5'- gGUGAGU---AgCGGGGGAGuGGGUGg -3' miRNA: 3'- gCACUCGagcUgGCCUCCUCuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 33205 | 0.67 | 0.855045 |
Target: 5'- cCGggGGGa--GGCCGGAGGGGgagccGGGAUGg -3' miRNA: 3'- -GCa-CUCgagCUGGCCUCCUC-----UCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 123051 | 0.67 | 0.855045 |
Target: 5'- --cGGGC---GCUGGAGGAGAGGGUc -3' miRNA: 3'- gcaCUCGagcUGGCCUCCUCUCCUAc -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 60457 | 0.68 | 0.831302 |
Target: 5'- aGUGAGCggcaGGCCGcGGGGAGcGG-UGa -3' miRNA: 3'- gCACUCGag--CUGGC-CUCCUCuCCuAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 26079 | 0.68 | 0.805995 |
Target: 5'- aCGUGGGC-CGgaaacaGCCgGGAGGGGAGGc-- -3' miRNA: 3'- -GCACUCGaGC------UGG-CCUCCUCUCCuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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