miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 3' -56.9 NC_006146.1 + 26079 0.68 0.805995
Target:  5'- aCGUGGGC-CGgaaacaGCCgGGAGGGGAGGc-- -3'
miRNA:   3'- -GCACUCGaGC------UGG-CCUCCUCUCCuac -5'
29064 3' -56.9 NC_006146.1 + 32160 0.7 0.703275
Target:  5'- -aUGGGCUCaGGCaaccguaaGGAGGGGGGGGUa -3'
miRNA:   3'- gcACUCGAG-CUGg-------CCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 33205 0.67 0.855045
Target:  5'- cCGggGGGa--GGCCGGAGGGGgagccGGGAUGg -3'
miRNA:   3'- -GCa-CUCgagCUGGCCUCCUC-----UCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 39748 0.68 0.797246
Target:  5'- gGUGGGuUUCGGCUGGAGGcuGGGGc- -3'
miRNA:   3'- gCACUC-GAGCUGGCCUCCucUCCUac -5'
29064 3' -56.9 NC_006146.1 + 39850 0.69 0.788354
Target:  5'- aGUGGGC-CGGCgGGggcugugugcccGGGGGAGGAg- -3'
miRNA:   3'- gCACUCGaGCUGgCC------------UCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 42051 0.75 0.45008
Target:  5'- gGUGAGCUCGACCcuaGGGAGAuucgcgacaGGGUGa -3'
miRNA:   3'- gCACUCGAGCUGGcc-UCCUCU---------CCUAC- -5'
29064 3' -56.9 NC_006146.1 + 43632 0.69 0.770174
Target:  5'- aGUGGGCggcggggcgUGGCCGccuGGGGAGAGGGg- -3'
miRNA:   3'- gCACUCGa--------GCUGGC---CUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 44760 0.74 0.477407
Target:  5'- --cGGGCUC--UCGGGGGAGAGGGUGc -3'
miRNA:   3'- gcaCUCGAGcuGGCCUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 51847 0.68 0.842588
Target:  5'- --gGGGCUCGGggccuggcccgagcCCGGggauggggaugaagAGGGGAGGGUGg -3'
miRNA:   3'- gcaCUCGAGCU--------------GGCC--------------UCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 57093 0.66 0.909469
Target:  5'- --cGAGCggcgcguccUGGCCaGcGGGGAGAGGGUGg -3'
miRNA:   3'- gcaCUCGa--------GCUGG-C-CUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 60457 0.68 0.831302
Target:  5'- aGUGAGCggcaGGCCGcGGGGAGcGG-UGa -3'
miRNA:   3'- gCACUCGag--CUGGC-CUCCUCuCCuAC- -5'
29064 3' -56.9 NC_006146.1 + 70570 0.75 0.45008
Target:  5'- uGUGGGCaUCGugcccguCCGG-GGGGAGGAUGu -3'
miRNA:   3'- gCACUCG-AGCu------GGCCuCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 72017 0.67 0.877046
Target:  5'- gGUGAGU---AgCGGGGGAGuGGGUGg -3'
miRNA:   3'- gCACUCGagcUgGCCUCCUCuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 79619 0.71 0.643563
Target:  5'- gGUGAGCUCGucCCGG-GGAcAGGGUc -3'
miRNA:   3'- gCACUCGAGCu-GGCCuCCUcUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 84704 0.69 0.751521
Target:  5'- gGUGucuGGCUCcgaggGACUGGAGGAGgagcucauuaGGGAUGa -3'
miRNA:   3'- gCAC---UCGAG-----CUGGCCUCCUC----------UCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 97317 1.09 0.002852
Target:  5'- cCGUGAGCUCGACCGGAGGAGAGGAUGg -3'
miRNA:   3'- -GCACUCGAGCUGGCCUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 97834 0.69 0.770174
Target:  5'- gGUGaAGUaccaCGACCuGGAGGAGGGGGc- -3'
miRNA:   3'- gCAC-UCGa---GCUGG-CCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 103622 0.68 0.797246
Target:  5'- gCG-GAGCUCGcaagcuggcACgCGGAGGAGGGGc-- -3'
miRNA:   3'- -GCaCUCGAGC---------UG-GCCUCCUCUCCuac -5'
29064 3' -56.9 NC_006146.1 + 107081 0.68 0.797246
Target:  5'- --aGAGaaaaugaaGGCCGGGGGAGuGGGUGg -3'
miRNA:   3'- gcaCUCgag-----CUGGCCUCCUCuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 112094 0.68 0.839399
Target:  5'- aGUGAcauuGCUUGGCuCGGGGGuGGAGG-UGg -3'
miRNA:   3'- gCACU----CGAGCUG-GCCUCC-UCUCCuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.