Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29064 | 3' | -56.9 | NC_006146.1 | + | 112550 | 0.69 | 0.742039 |
Target: 5'- uCG-GAGCUCaGACCcGGGGucguGAGGAUGc -3' miRNA: 3'- -GCaCUCGAG-CUGGcCUCCu---CUCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 117594 | 0.72 | 0.603473 |
Target: 5'- --cGGGCUCGGacuCCGGccaGGGAGAGGAg- -3' miRNA: 3'- gcaCUCGAGCU---GGCC---UCCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 123051 | 0.67 | 0.855045 |
Target: 5'- --cGGGC---GCUGGAGGAGAGGGUc -3' miRNA: 3'- gcaCUCGagcUGGCCUCCUCUCCUAc -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 128439 | 0.66 | 0.909469 |
Target: 5'- --cGGGCcgcaGACCGGgcGGGAGGGGGa- -3' miRNA: 3'- gcaCUCGag--CUGGCC--UCCUCUCCUac -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135177 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135270 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135363 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135456 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135549 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135642 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135734 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135827 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 135920 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136013 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136106 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136199 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136292 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136385 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136478 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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29064 | 3' | -56.9 | NC_006146.1 | + | 136571 | 0.68 | 0.839399 |
Target: 5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3' miRNA: 3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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