miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 3' -56.9 NC_006146.1 + 170407 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 170286 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 170079 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 169722 0.66 0.896522
Target:  5'- gGUGGGCgcucagaUCGGCgCGGGGGAGccccGGGGc- -3'
miRNA:   3'- gCACUCG-------AGCUG-GCCUCCUC----UCCUac -5'
29064 3' -56.9 NC_006146.1 + 169476 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 169355 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 169147 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 168790 0.66 0.896522
Target:  5'- gGUGGGCgcucagaUCGGCgCGGGGGAGccccGGGGc- -3'
miRNA:   3'- gCACUCG-------AGCUG-GCCUCCUC----UCCUac -5'
29064 3' -56.9 NC_006146.1 + 168544 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 168423 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 168215 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 167858 0.66 0.896522
Target:  5'- gGUGGGCgcucagaUCGGCgCGGGGGAGccccGGGGc- -3'
miRNA:   3'- gCACUCG-------AGCUG-GCCUCCUC----UCCUac -5'
29064 3' -56.9 NC_006146.1 + 167612 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 167491 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 167283 0.73 0.563704
Target:  5'- gCGUGGGgaUGGCCGGcGGGAGGGGccGg -3'
miRNA:   3'- -GCACUCgaGCUGGCC-UCCUCUCCuaC- -5'
29064 3' -56.9 NC_006146.1 + 156953 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 153875 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 150797 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 149141 0.69 0.750577
Target:  5'- gGUGGGCgggCGGugaaauuCUGGAGGAcggaGAGGGUGg -3'
miRNA:   3'- gCACUCGa--GCU-------GGCCUCCU----CUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 147719 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.