miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 150821 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 4856 0.67 0.664741
Target:  5'- gGGGAAuAggGGCaggGGCGGGG-GCCa- -3'
miRNA:   3'- gCCCUUcUuaCCG---CCGCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 156812 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 153734 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 147579 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 144501 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 141423 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 156977 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 153899 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 72080 0.67 0.674565
Target:  5'- aCGGGuGGAAUGGUGGCGuGGaaCCUc -3'
miRNA:   3'- -GCCCuUCUUACCGCCGCcCCacGGAc -5'
29065 5' -60.3 NC_006146.1 + 18864 0.67 0.684357
Target:  5'- cCGGGGu-GGUGGaCGuGCGGGG-GCCUc -3'
miRNA:   3'- -GCCCUucUUACC-GC-CGCCCCaCGGAc -5'
29065 5' -60.3 NC_006146.1 + 70260 0.67 0.694109
Target:  5'- uCGGGGAacAUGGCGGUgauGGGGaccacgGCCg- -3'
miRNA:   3'- -GCCCUUcuUACCGCCG---CCCCa-----CGGac -5'
29065 5' -60.3 NC_006146.1 + 115202 0.66 0.778722
Target:  5'- gCGGGcAGAGccccccGGCGGCGGccGUGCCc- -3'
miRNA:   3'- -GCCCuUCUUa-----CCGCCGCCc-CACGGac -5'
29065 5' -60.3 NC_006146.1 + 33222 0.66 0.7697
Target:  5'- gGGGAgccGGGAUGG-GGCuGGGGUuCCg- -3'
miRNA:   3'- gCCCU---UCUUACCgCCG-CCCCAcGGac -5'
29065 5' -60.3 NC_006146.1 + 137391 0.66 0.7697
Target:  5'- aGGGAGGGA-GGCcGgGaGGGUGCUg- -3'
miRNA:   3'- gCCCUUCUUaCCGcCgC-CCCACGGac -5'
29065 5' -60.3 NC_006146.1 + 101704 0.66 0.741983
Target:  5'- gGGGggGAGaGaGCaGCGGGG-GUUUGg -3'
miRNA:   3'- gCCCuuCUUaC-CGcCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 31692 0.66 0.741983
Target:  5'- aGGGAAGggUGGgGGacCGcGGcUGCCa- -3'
miRNA:   3'- gCCCUUCuuACCgCC--GC-CCcACGGac -5'
29065 5' -60.3 NC_006146.1 + 162035 0.66 0.732554
Target:  5'- uGGGAGcc-UGGgGGCGGGGgcagGCUg- -3'
miRNA:   3'- gCCCUUcuuACCgCCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 129378 0.66 0.731606
Target:  5'- aGGGAAGc--GGCGGCcuccucuGGGGccggaaGCCUGc -3'
miRNA:   3'- gCCCUUCuuaCCGCCG-------CCCCa-----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 140095 0.66 0.723044
Target:  5'- gGuGGAAGAGggGGUGGCGGaGGUGgUg- -3'
miRNA:   3'- gC-CCUUCUUa-CCGCCGCC-CCACgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.