miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2907 3' -59.8 NC_001493.1 + 70425 0.66 0.737704
Target:  5'- -uGCCagCACCGGUCgagGCACCGguACagCGAa -3'
miRNA:   3'- guCGG--GUGGCCAGa--CGUGGU--UGg-GCU- -5'
2907 3' -59.8 NC_001493.1 + 45959 0.66 0.728043
Target:  5'- aGGUCCAgugCGGUCUGCAUgGACuCCa- -3'
miRNA:   3'- gUCGGGUg--GCCAGACGUGgUUG-GGcu -5'
2907 3' -59.8 NC_001493.1 + 47914 0.66 0.71928
Target:  5'- uCGGaCCCGCgGGUCUGgAUCGucugggguuguacauCCCGAa -3'
miRNA:   3'- -GUC-GGGUGgCCAGACgUGGUu--------------GGGCU- -5'
2907 3' -59.8 NC_001493.1 + 46214 0.66 0.718302
Target:  5'- gGGCuCCGCgCGuUCaaUGCGCCGguGCCCGAg -3'
miRNA:   3'- gUCG-GGUG-GCcAG--ACGUGGU--UGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 90140 0.66 0.718302
Target:  5'- aCAaCCgGCCGGUCcgUGCGCgAcCCCGGa -3'
miRNA:   3'- -GUcGGgUGGCCAG--ACGUGgUuGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 62881 0.66 0.70849
Target:  5'- aAGCCCACgGGg--GCgACCGGCaCCGu -3'
miRNA:   3'- gUCGGGUGgCCagaCG-UGGUUG-GGCu -5'
2907 3' -59.8 NC_001493.1 + 64893 0.66 0.70849
Target:  5'- gGGCCaacggGCCGGUC-GCgaugaACgGACCCGAc -3'
miRNA:   3'- gUCGGg----UGGCCAGaCG-----UGgUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 63127 0.66 0.70849
Target:  5'- aAGCCCACgGGg--GCgACCGGCaCCGu -3'
miRNA:   3'- gUCGGGUGgCCagaCG-UGGUUG-GGCu -5'
2907 3' -59.8 NC_001493.1 + 62965 0.66 0.70849
Target:  5'- aAGCCCACgGGg--GCgACCGGCaCCGu -3'
miRNA:   3'- gUCGGGUGgCCagaCG-UGGUUG-GGCu -5'
2907 3' -59.8 NC_001493.1 + 26310 0.66 0.70849
Target:  5'- aGGCUCACCGGUgguucucggcaCcGCGCCGuCCCa- -3'
miRNA:   3'- gUCGGGUGGCCA-----------GaCGUGGUuGGGcu -5'
2907 3' -59.8 NC_001493.1 + 77727 0.66 0.698615
Target:  5'- -cGCCCACgUGGUCauggaccGCGCCAuGCCCa- -3'
miRNA:   3'- guCGGGUG-GCCAGa------CGUGGU-UGGGcu -5'
2907 3' -59.8 NC_001493.1 + 62470 0.66 0.688686
Target:  5'- aUAGCCC-CCG---UGgACCGACCCGGu -3'
miRNA:   3'- -GUCGGGuGGCcagACgUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 10571 0.66 0.688686
Target:  5'- -uGCCCACaCGGUCUGau----CCCGAa -3'
miRNA:   3'- guCGGGUG-GCCAGACgugguuGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 75304 0.66 0.688686
Target:  5'- uGGCCUg--GGcCaGCACCGACCCGAu -3'
miRNA:   3'- gUCGGGuggCCaGaCGUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 126126 0.66 0.688686
Target:  5'- -uGCCCACaCGGUCUGau----CCCGAa -3'
miRNA:   3'- guCGGGUG-GCCAGACgugguuGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 94836 0.67 0.678712
Target:  5'- --aCCC-CCGGUCggGCA-CGACCCGGu -3'
miRNA:   3'- gucGGGuGGCCAGa-CGUgGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 111353 0.67 0.678712
Target:  5'- -cGCUCACCGGUCcgGCACCcGgUgGAu -3'
miRNA:   3'- guCGGGUGGCCAGa-CGUGGuUgGgCU- -5'
2907 3' -59.8 NC_001493.1 + 93657 0.67 0.6687
Target:  5'- gCGGCCCugCaGGUC-GCGCCcg-CCGAu -3'
miRNA:   3'- -GUCGGGugG-CCAGaCGUGGuugGGCU- -5'
2907 3' -59.8 NC_001493.1 + 110337 0.67 0.6687
Target:  5'- gCGGCCCAUCGaGUUUcacuccggGCGCgGGCUCGAc -3'
miRNA:   3'- -GUCGGGUGGC-CAGA--------CGUGgUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 118529 0.67 0.6687
Target:  5'- gAGUCCGa-GGUCcGCACCgAACCCGc -3'
miRNA:   3'- gUCGGGUggCCAGaCGUGG-UUGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.