miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2907 5' -54.5 NC_001493.1 + 35436 1.03 0.009049
Target:  5'- cGCUGGGGCAGC-ACAUACCGUGAACCg -3'
miRNA:   3'- -CGACCCCGUCGcUGUAUGGCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 109787 0.72 0.664024
Target:  5'- cGCgagGGGGUugaggAGCGACAUguacgagcgugauGCUGUGggUCa -3'
miRNA:   3'- -CGa--CCCCG-----UCGCUGUA-------------UGGCACuuGG- -5'
2907 5' -54.5 NC_001493.1 + 26139 0.71 0.716143
Target:  5'- aCUGGGaCGGCGcgGUGCCGaGAACCa -3'
miRNA:   3'- cGACCCcGUCGCugUAUGGCaCUUGG- -5'
2907 5' -54.5 NC_001493.1 + 55048 0.71 0.726177
Target:  5'- -aUGGuGGCGGCGggGCGcugACCGUGGGCg -3'
miRNA:   3'- cgACC-CCGUCGC--UGUa--UGGCACUUGg -5'
2907 5' -54.5 NC_001493.1 + 124698 0.71 0.745986
Target:  5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3'
miRNA:   3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5'
2907 5' -54.5 NC_001493.1 + 9143 0.71 0.745986
Target:  5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3'
miRNA:   3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5'
2907 5' -54.5 NC_001493.1 + 36196 0.71 0.745986
Target:  5'- gGCUGuGGCAGCGAggguUGUACCG-GGGCg -3'
miRNA:   3'- -CGACcCCGUCGCU----GUAUGGCaCUUGg -5'
2907 5' -54.5 NC_001493.1 + 108875 0.7 0.765385
Target:  5'- cGCUGGGGUGuGCGACcaucGCCugcgaUGGACCc -3'
miRNA:   3'- -CGACCCCGU-CGCUGua--UGGc----ACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 45186 0.7 0.774908
Target:  5'- cGCcGGGuGCuGCGcGCAUAUCGaggUGAGCCg -3'
miRNA:   3'- -CGaCCC-CGuCGC-UGUAUGGC---ACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 89243 0.7 0.781496
Target:  5'- --aGGGGguGCGACcgagaugggagcccgAgCGUGGACCa -3'
miRNA:   3'- cgaCCCCguCGCUGua-------------UgGCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 94975 0.69 0.820372
Target:  5'- cGCccgGGGaucuacgaGCGGCGGCAgauuCCGUGGGCg -3'
miRNA:   3'- -CGa--CCC--------CGUCGCUGUau--GGCACUUGg -5'
2907 5' -54.5 NC_001493.1 + 112541 0.69 0.828973
Target:  5'- ---cGGGUGuCGACAuucuUACCGUGAACCu -3'
miRNA:   3'- cgacCCCGUcGCUGU----AUGGCACUUGG- -5'
2907 5' -54.5 NC_001493.1 + 63042 0.69 0.83739
Target:  5'- ---cGGG-AGCGACcgGUACCGUGAccACCa -3'
miRNA:   3'- cgacCCCgUCGCUG--UAUGGCACU--UGG- -5'
2907 5' -54.5 NC_001493.1 + 72814 0.68 0.861464
Target:  5'- -aUGGcGUGGCGACG-ACCGUGAucuACCc -3'
miRNA:   3'- cgACCcCGUCGCUGUaUGGCACU---UGG- -5'
2907 5' -54.5 NC_001493.1 + 21387 0.68 0.869073
Target:  5'- --aGGGGCGGCGGCcUGaaGgucGGGCCu -3'
miRNA:   3'- cgaCCCCGUCGCUGuAUggCa--CUUGG- -5'
2907 5' -54.5 NC_001493.1 + 42070 0.68 0.869073
Target:  5'- --aGGGGCGGCcccggGACGUGCCcccuGUGucuCCg -3'
miRNA:   3'- cgaCCCCGUCG-----CUGUAUGG----CACuu-GG- -5'
2907 5' -54.5 NC_001493.1 + 92968 0.68 0.876464
Target:  5'- gGgUGGGGCgAGCu-CG-ACCGUGAGCg -3'
miRNA:   3'- -CgACCCCG-UCGcuGUaUGGCACUUGg -5'
2907 5' -54.5 NC_001493.1 + 24297 0.68 0.876464
Target:  5'- gGCUGGGaauuuagAGCGAUucuCCGUGAACg -3'
miRNA:   3'- -CGACCCcg-----UCGCUGuauGGCACUUGg -5'
2907 5' -54.5 NC_001493.1 + 130548 0.68 0.88363
Target:  5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3'
miRNA:   3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5'
2907 5' -54.5 NC_001493.1 + 14993 0.68 0.88363
Target:  5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3'
miRNA:   3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.