Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 26139 | 0.71 | 0.716143 |
Target: 5'- aCUGGGaCGGCGcgGUGCCGaGAACCa -3' miRNA: 3'- cGACCCcGUCGCugUAUGGCaCUUGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 36616 | 0.67 | 0.90997 |
Target: 5'- uGCUGGuGGUGGcCGugGgGCUGUGggUg -3' miRNA: 3'- -CGACC-CCGUC-GCugUaUGGCACuuGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 5324 | 0.66 | 0.927197 |
Target: 5'- gGCgGGGGCAccCGugGgcACCGUGA-CCg -3' miRNA: 3'- -CGaCCCCGUc-GCugUa-UGGCACUuGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 120878 | 0.66 | 0.927197 |
Target: 5'- gGCgGGGGCAccCGugGgcACCGUGA-CCg -3' miRNA: 3'- -CGaCCCCGUc-GCugUa-UGGCACUuGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 88191 | 0.66 | 0.936966 |
Target: 5'- --cGGGGUaccggcuGGCGAaucACCGgUGGACCg -3' miRNA: 3'- cgaCCCCG-------UCGCUguaUGGC-ACUUGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 47452 | 0.66 | 0.942219 |
Target: 5'- -aUGGGG-GGaGGCAUgACCGUGGACa -3' miRNA: 3'- cgACCCCgUCgCUGUA-UGGCACUUGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 11219 | 0.66 | 0.946741 |
Target: 5'- uGCUGaGGCGGCG-CAUGgUGcUGGACa -3' miRNA: 3'- -CGACcCCGUCGCuGUAUgGC-ACUUGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 87033 | 0.66 | 0.946741 |
Target: 5'- cGCUGcGGGUguGGUGACAUACuCGguaAACa -3' miRNA: 3'- -CGAC-CCCG--UCGCUGUAUG-GCac-UUGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 126773 | 0.66 | 0.946741 |
Target: 5'- uGCUGaGGCGGCG-CAUGgUGcUGGACa -3' miRNA: 3'- -CGACcCCGUCGCuGUAUgGC-ACUUGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 90716 | 0.67 | 0.90997 |
Target: 5'- cUUGaGGUAGCGGCugaucAgCGUGAACCa -3' miRNA: 3'- cGACcCCGUCGCUGua---UgGCACUUGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 93780 | 0.67 | 0.890568 |
Target: 5'- uGC-GGGGCGuacuaCGACGagGCCGUGA-CCa -3' miRNA: 3'- -CGaCCCCGUc----GCUGUa-UGGCACUuGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 36196 | 0.71 | 0.745986 |
Target: 5'- gGCUGuGGCAGCGAggguUGUACCG-GGGCg -3' miRNA: 3'- -CGACcCCGUCGCU----GUAUGGCaCUUGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 9143 | 0.71 | 0.745986 |
Target: 5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3' miRNA: 3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 124698 | 0.71 | 0.745986 |
Target: 5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3' miRNA: 3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 89243 | 0.7 | 0.781496 |
Target: 5'- --aGGGGguGCGACcgagaugggagcccgAgCGUGGACCa -3' miRNA: 3'- cgaCCCCguCGCUGua-------------UgGCACUUGG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 94975 | 0.69 | 0.820372 |
Target: 5'- cGCccgGGGaucuacgaGCGGCGGCAgauuCCGUGGGCg -3' miRNA: 3'- -CGa--CCC--------CGUCGCUGUau--GGCACUUGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 42070 | 0.68 | 0.869073 |
Target: 5'- --aGGGGCGGCcccggGACGUGCCcccuGUGucuCCg -3' miRNA: 3'- cgaCCCCGUCG-----CUGUAUGG----CACuu-GG- -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 14993 | 0.68 | 0.88363 |
Target: 5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3' miRNA: 3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 130548 | 0.68 | 0.88363 |
Target: 5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3' miRNA: 3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5' |
|||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 62873 | 0.66 | 0.946741 |
Target: 5'- --gGGGGCGacCGGC--ACCGUGAccACCa -3' miRNA: 3'- cgaCCCCGUc-GCUGuaUGGCACU--UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home