Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 5324 | 0.66 | 0.927197 |
Target: 5'- gGCgGGGGCAccCGugGgcACCGUGA-CCg -3' miRNA: 3'- -CGaCCCCGUc-GCugUa-UGGCACUuGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 9143 | 0.71 | 0.745986 |
Target: 5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3' miRNA: 3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 9722 | 0.67 | 0.890568 |
Target: 5'- --cGGcGaGCAccGCGugGUagGCCGUGAGCCc -3' miRNA: 3'- cgaCC-C-CGU--CGCugUA--UGGCACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 11219 | 0.66 | 0.946741 |
Target: 5'- uGCUGaGGCGGCG-CAUGgUGcUGGACa -3' miRNA: 3'- -CGACcCCGUCGCuGUAUgGC-ACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 14906 | 0.67 | 0.903106 |
Target: 5'- --gGGGGCAGgGgggaaggGCuucGCCGUGAGCg -3' miRNA: 3'- cgaCCCCGUCgC-------UGua-UGGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 14993 | 0.68 | 0.88363 |
Target: 5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3' miRNA: 3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 21387 | 0.68 | 0.869073 |
Target: 5'- --aGGGGCGGCGGCcUGaaGgucGGGCCu -3' miRNA: 3'- cgaCCCCGUCGCUGuAUggCa--CUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 24297 | 0.68 | 0.876464 |
Target: 5'- gGCUGGGaauuuagAGCGAUucuCCGUGAACg -3' miRNA: 3'- -CGACCCcg-----UCGCUGuauGGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 26139 | 0.71 | 0.716143 |
Target: 5'- aCUGGGaCGGCGcgGUGCCGaGAACCa -3' miRNA: 3'- cGACCCcGUCGCugUAUGGCaCUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 26432 | 0.66 | 0.937456 |
Target: 5'- --aGGGGUAGCGACucACUGac-GCCa -3' miRNA: 3'- cgaCCCCGUCGCUGuaUGGCacuUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 35436 | 1.03 | 0.009049 |
Target: 5'- cGCUGGGGCAGC-ACAUACCGUGAACCg -3' miRNA: 3'- -CGACCCCGUCGcUGUAUGGCACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 36196 | 0.71 | 0.745986 |
Target: 5'- gGCUGuGGCAGCGAggguUGUACCG-GGGCg -3' miRNA: 3'- -CGACcCCGUCGCU----GUAUGGCaCUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 36616 | 0.67 | 0.90997 |
Target: 5'- uGCUGGuGGUGGcCGugGgGCUGUGggUg -3' miRNA: 3'- -CGACC-CCGUC-GCugUaUGGCACuuGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 42070 | 0.68 | 0.869073 |
Target: 5'- --aGGGGCGGCcccggGACGUGCCcccuGUGucuCCg -3' miRNA: 3'- cgaCCCCGUCG-----CUGUAUGG----CACuu-GG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 45186 | 0.7 | 0.774908 |
Target: 5'- cGCcGGGuGCuGCGcGCAUAUCGaggUGAGCCg -3' miRNA: 3'- -CGaCCC-CGuCGC-UGUAUGGC---ACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 47452 | 0.66 | 0.942219 |
Target: 5'- -aUGGGG-GGaGGCAUgACCGUGGACa -3' miRNA: 3'- cgACCCCgUCgCUGUA-UGGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 55048 | 0.71 | 0.726177 |
Target: 5'- -aUGGuGGCGGCGggGCGcugACCGUGGGCg -3' miRNA: 3'- cgACC-CCGUCGC--UGUa--UGGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 62873 | 0.66 | 0.946741 |
Target: 5'- --gGGGGCGacCGGC--ACCGUGAccACCa -3' miRNA: 3'- cgaCCCCGUc-GCUGuaUGGCACU--UGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 62957 | 0.66 | 0.946741 |
Target: 5'- --gGGGGCGacCGGC--ACCGUGAccACCa -3' miRNA: 3'- cgaCCCCGUc-GCUGuaUGGCACU--UGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 63042 | 0.69 | 0.83739 |
Target: 5'- ---cGGG-AGCGACcgGUACCGUGAccACCa -3' miRNA: 3'- cgacCCCgUCGCUG--UAUGGCACU--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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