miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 3' -53.2 NC_006146.1 + 62461 0.66 0.978632
Target:  5'- cCUUGGUacGGACg--GGCaCU-GCGUCCAc -3'
miRNA:   3'- -GAACCG--CCUGaaaUCG-GAgUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 167807 0.66 0.978632
Target:  5'- -gUGGCGGGCgcgcgUGGCC-CGCccCCGg -3'
miRNA:   3'- gaACCGCCUGaa---AUCGGaGUGcaGGU- -5'
29073 3' -53.2 NC_006146.1 + 168739 0.66 0.978632
Target:  5'- -gUGGCGGGCgcgcgUGGCC-CGCccCCGg -3'
miRNA:   3'- gaACCGCCUGaa---AUCGGaGUGcaGGU- -5'
29073 3' -53.2 NC_006146.1 + 169671 0.66 0.978632
Target:  5'- -gUGGCGGGCgcgcgUGGCC-CGCccCCGg -3'
miRNA:   3'- gaACCGCCUGaa---AUCGGaGUGcaGGU- -5'
29073 3' -53.2 NC_006146.1 + 118892 0.66 0.978632
Target:  5'- ---cGCGGACU---GCCUCAgGUUCGa -3'
miRNA:   3'- gaacCGCCUGAaauCGGAGUgCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 12803 0.66 0.978399
Target:  5'- --gGGCGGACguacggacggcggcuGCCggugcgCAUGUCCAa -3'
miRNA:   3'- gaaCCGCCUGaaau-----------CGGa-----GUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 108699 0.66 0.976215
Target:  5'- --cGGCgcaGGGCuUUUAGCUUCugGcUCCGu -3'
miRNA:   3'- gaaCCG---CCUG-AAAUCGGAGugC-AGGU- -5'
29073 3' -53.2 NC_006146.1 + 75872 0.66 0.976215
Target:  5'- -gUGGUGGACga-GGCCgggacccucUC-CGUCCAc -3'
miRNA:   3'- gaACCGCCUGaaaUCGG---------AGuGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 57387 0.66 0.973604
Target:  5'- --cGGUGGGCU--GGCCcCGCGaCCGu -3'
miRNA:   3'- gaaCCGCCUGAaaUCGGaGUGCaGGU- -5'
29073 3' -53.2 NC_006146.1 + 53767 0.66 0.970499
Target:  5'- --cGGCGGGCggaggUcucgccggacgagGGCCUCggcccgcgcgGCGUCCAu -3'
miRNA:   3'- gaaCCGCCUGaa---A-------------UCGGAG----------UGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 71147 0.66 0.970499
Target:  5'- --aGGUGGAUc-UGGCCUCuuccgauggguccGCGUCCu -3'
miRNA:   3'- gaaCCGCCUGaaAUCGGAG-------------UGCAGGu -5'
29073 3' -53.2 NC_006146.1 + 39682 0.66 0.96777
Target:  5'- --cGGCGGGCUccugGGCCUgcaGCG-CCGc -3'
miRNA:   3'- gaaCCGCCUGAaa--UCGGAg--UGCaGGU- -5'
29073 3' -53.2 NC_006146.1 + 154890 0.67 0.960718
Target:  5'- --cGGgGGGCag-GGCCUCgcccgggcugaccGCGUCCGc -3'
miRNA:   3'- gaaCCgCCUGaaaUCGGAG-------------UGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 61922 0.67 0.958521
Target:  5'- --cGGCGGGCcaucaggggcuccagGGCC-CugGUCCAc -3'
miRNA:   3'- gaaCCGCCUGaaa------------UCGGaGugCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 155869 0.67 0.957392
Target:  5'- --cGGCGGGCccUGGCCagGCGcCCc -3'
miRNA:   3'- gaaCCGCCUGaaAUCGGagUGCaGGu -5'
29073 3' -53.2 NC_006146.1 + 20490 0.67 0.953476
Target:  5'- -gUGGUGGACUUUgccAGCCUCuaccCGagCAu -3'
miRNA:   3'- gaACCGCCUGAAA---UCGGAGu---GCagGU- -5'
29073 3' -53.2 NC_006146.1 + 63759 0.67 0.953476
Target:  5'- -cUGGUGGGCgacgUAGCCUaucugCACGUUgGa -3'
miRNA:   3'- gaACCGCCUGaa--AUCGGA-----GUGCAGgU- -5'
29073 3' -53.2 NC_006146.1 + 120972 0.67 0.951014
Target:  5'- --cGGCGGACguccgggaccgagUGGCCUCgGCGgccUCCGa -3'
miRNA:   3'- gaaCCGCCUGaa-----------AUCGGAG-UGC---AGGU- -5'
29073 3' -53.2 NC_006146.1 + 77920 0.67 0.949325
Target:  5'- --gGGCGGGC---GGCCUCGCaGgugCCGg -3'
miRNA:   3'- gaaCCGCCUGaaaUCGGAGUG-Ca--GGU- -5'
29073 3' -53.2 NC_006146.1 + 46305 0.67 0.949325
Target:  5'- --gGGCGGGCUUUAGCaaauUCAUcUCUg -3'
miRNA:   3'- gaaCCGCCUGAAAUCGg---AGUGcAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.