miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2908 3' -48.4 NC_001493.1 + 97590 0.66 0.999452
Target:  5'- ---gACGG-CGAGAAGCgGGAgAAGa -3'
miRNA:   3'- gcuaUGCCaGCUCUUCGaCUUgUUCc -5'
2908 3' -48.4 NC_001493.1 + 3764 0.66 0.999452
Target:  5'- uCGAgugGGUgGAGAAGgaGGggGCGAGGc -3'
miRNA:   3'- -GCUaugCCAgCUCUUCgaCU--UGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 49662 0.66 0.999452
Target:  5'- cCGG-ACGGUCGGGAA-CUGGAUu-GGc -3'
miRNA:   3'- -GCUaUGCCAGCUCUUcGACUUGuuCC- -5'
2908 3' -48.4 NC_001493.1 + 119318 0.66 0.999452
Target:  5'- uCGAgugGGUgGAGAAGgaGGggGCGAGGc -3'
miRNA:   3'- -GCUaugCCAgCUCUUCgaCU--UGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 12156 0.66 0.999375
Target:  5'- cCGAUGC-GUCGAGGgaggcgggaauagauGGUggaccgGGACGAGGu -3'
miRNA:   3'- -GCUAUGcCAGCUCU---------------UCGa-----CUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 3216 0.66 0.998746
Target:  5'- aGAgGCGGaCGAGGAcCcGGACGAGGu -3'
miRNA:   3'- gCUaUGCCaGCUCUUcGaCUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 118770 0.66 0.998746
Target:  5'- aGAgGCGGaCGAGGAcCcGGACGAGGu -3'
miRNA:   3'- gCUaUGCCaGCUCUUcGaCUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 94624 0.66 0.998746
Target:  5'- gGGUGCGGUCGA---GCUGuuCcGGGa -3'
miRNA:   3'- gCUAUGCCAGCUcuuCGACuuGuUCC- -5'
2908 3' -48.4 NC_001493.1 + 96179 0.67 0.99848
Target:  5'- ---gACGGUCGGuGAGCguGACGGGGa -3'
miRNA:   3'- gcuaUGCCAGCUcUUCGacUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 36140 0.67 0.99848
Target:  5'- uCGGUGCGGaUGuuccggguggaGGggGCUccugugGAGCGAGGg -3'
miRNA:   3'- -GCUAUGCCaGC-----------UCuuCGA------CUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 127711 0.67 0.998298
Target:  5'- cCGAUGC-GUCGAGGgaggcgggaauagauGGUggccgGGACGAGGu -3'
miRNA:   3'- -GCUAUGcCAGCUCU---------------UCGa----CUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 102366 0.67 0.998168
Target:  5'- uGAcGCGuuccUCGAGAAG-UGGACAGGGc -3'
miRNA:   3'- gCUaUGCc---AGCUCUUCgACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 109718 0.67 0.998168
Target:  5'- gCGAacgACGGggGAGAuGCUGGACGAa- -3'
miRNA:   3'- -GCUa--UGCCagCUCUuCGACUUGUUcc -5'
2908 3' -48.4 NC_001493.1 + 88464 0.67 0.998168
Target:  5'- cCGGU-CGGUaCG-GAGGC-GGACGGGGu -3'
miRNA:   3'- -GCUAuGCCA-GCuCUUCGaCUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 79840 0.68 0.99633
Target:  5'- cCGGUGagGGUCGugcccgggaaAGggGUggUGAGCAGGGu -3'
miRNA:   3'- -GCUAUg-CCAGC----------UCuuCG--ACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 128968 0.68 0.99633
Target:  5'- ---cGCGGUCGuGggGCccacggUGAGgGAGGc -3'
miRNA:   3'- gcuaUGCCAGCuCuuCG------ACUUgUUCC- -5'
2908 3' -48.4 NC_001493.1 + 77838 0.68 0.99633
Target:  5'- aGAUACcaGGuUCGucuacAGGAGCUGAGCGcugcGGGa -3'
miRNA:   3'- gCUAUG--CC-AGC-----UCUUCGACUUGU----UCC- -5'
2908 3' -48.4 NC_001493.1 + 13414 0.68 0.99633
Target:  5'- ---cGCGGUCGuGggGCccacggUGAGgGAGGc -3'
miRNA:   3'- gcuaUGCCAGCuCuuCG------ACUUgUUCC- -5'
2908 3' -48.4 NC_001493.1 + 126776 0.68 0.994126
Target:  5'- uGAgGCGG-CGcauGguGCUGGACAGGGa -3'
miRNA:   3'- gCUaUGCCaGCu--CuuCGACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 11222 0.68 0.994126
Target:  5'- uGAgGCGG-CGcauGguGCUGGACAGGGa -3'
miRNA:   3'- gCUaUGCCaGCu--CuuCGACUUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.