miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2908 5' -54.8 NC_001493.1 + 96052 0.66 0.943225
Target:  5'- -aCCgccGGCCaccgguacguagacAUCGUCCGUGUGACCg -3'
miRNA:   3'- gaGGa--CUGGgu------------UAGCAGGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 112651 0.66 0.942767
Target:  5'- -cCCUcACCCAGaaGUUCGCGUcgAGCCu -3'
miRNA:   3'- gaGGAcUGGGUUagCAGGCGCG--UUGG- -5'
2908 5' -54.8 NC_001493.1 + 85248 0.66 0.933105
Target:  5'- gUCUUGAaaCGcgUGUCCGCcGUGGCCa -3'
miRNA:   3'- gAGGACUggGUuaGCAGGCG-CGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 28413 0.66 0.929495
Target:  5'- gCUCCgcgagcagauacgGACUCugacagaugaaaggGAUCGUCUGCucGCGACCg -3'
miRNA:   3'- -GAGGa------------CUGGG--------------UUAGCAGGCG--CGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 59544 0.66 0.927911
Target:  5'- aUCCUGAUCCcccUCGUguaCGCgGUGGCCg -3'
miRNA:   3'- gAGGACUGGGuu-AGCAg--GCG-CGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 61331 0.66 0.922474
Target:  5'- aUCCgaggcagguUGGCCCGga-GUCC-CGCGACCc -3'
miRNA:   3'- gAGG---------ACUGGGUuagCAGGcGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 44186 0.66 0.922474
Target:  5'- -aCC--GCCCAG-CGUaCGCGCGGCCu -3'
miRNA:   3'- gaGGacUGGGUUaGCAgGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 37714 0.66 0.917373
Target:  5'- uCUCCccgggcGACCCGGUCGacgaccccuccauccCCGCGCAcaugcgcaaguACCa -3'
miRNA:   3'- -GAGGa-----CUGGGUUAGCa--------------GGCGCGU-----------UGG- -5'
2908 5' -54.8 NC_001493.1 + 39340 0.66 0.916794
Target:  5'- ----cGACUCGAUcacgagcucCGUCCGCGCucuACCg -3'
miRNA:   3'- gaggaCUGGGUUA---------GCAGGCGCGu--UGG- -5'
2908 5' -54.8 NC_001493.1 + 28074 0.66 0.916794
Target:  5'- gUCU--ACCCAGUCGucucucguacUCCGCGagcaGACCg -3'
miRNA:   3'- gAGGacUGGGUUAGC----------AGGCGCg---UUGG- -5'
2908 5' -54.8 NC_001493.1 + 13145 0.67 0.904711
Target:  5'- uUCCacaUGACCC---UGUCCGCGaccgAACCg -3'
miRNA:   3'- gAGG---ACUGGGuuaGCAGGCGCg---UUGG- -5'
2908 5' -54.8 NC_001493.1 + 128699 0.67 0.904711
Target:  5'- uUCCacaUGACCC---UGUCCGCGaccgAACCg -3'
miRNA:   3'- gAGG---ACUGGGuuaGCAGGCGCg---UUGG- -5'
2908 5' -54.8 NC_001493.1 + 126326 0.67 0.898312
Target:  5'- -aCCgcggagGACCCgGAUCGagCCGCGUggUCa -3'
miRNA:   3'- gaGGa-----CUGGG-UUAGCa-GGCGCGuuGG- -5'
2908 5' -54.8 NC_001493.1 + 25869 0.67 0.898312
Target:  5'- -aCCUcGAUCCGGUucaggUGUCCGCGguGCg -3'
miRNA:   3'- gaGGA-CUGGGUUA-----GCAGGCGCguUGg -5'
2908 5' -54.8 NC_001493.1 + 10772 0.67 0.898312
Target:  5'- -aCCgcggagGACCCgGAUCGagCCGCGUggUCa -3'
miRNA:   3'- gaGGa-----CUGGG-UUAGCa-GGCGCGuuGG- -5'
2908 5' -54.8 NC_001493.1 + 57401 0.67 0.891678
Target:  5'- gUCCgGGCCCuguGUCGUCaGCGC--CCu -3'
miRNA:   3'- gAGGaCUGGGu--UAGCAGgCGCGuuGG- -5'
2908 5' -54.8 NC_001493.1 + 71843 0.67 0.891678
Target:  5'- gCUCCgGGCCCAggugAUCGaucugUCGCGCAGa- -3'
miRNA:   3'- -GAGGaCUGGGU----UAGCa----GGCGCGUUgg -5'
2908 5' -54.8 NC_001493.1 + 29834 0.67 0.884812
Target:  5'- -cCCUGAgauCCgCGAUCGUCUucuCGUAGCCg -3'
miRNA:   3'- gaGGACU---GG-GUUAGCAGGc--GCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 43445 0.68 0.87772
Target:  5'- gUCUgugGAUCUccggggGGUCGaUCUGCGCGGCCg -3'
miRNA:   3'- gAGGa--CUGGG------UUAGC-AGGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 72615 0.68 0.870404
Target:  5'- aCUCCUGACCCGGgau----CGCAGCCc -3'
miRNA:   3'- -GAGGACUGGGUUagcaggcGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.