miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 3' -62.1 NC_006146.1 + 111451 1.11 0.000702
Target:  5'- aUCAUCGGGGAGUCCUGCCCCCUGCCCu -3'
miRNA:   3'- -AGUAGCCCCUCAGGACGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 166029 0.8 0.114875
Target:  5'- gCAUCGGGG-GUgCCUGUggcccccgCCCCUGCCCc -3'
miRNA:   3'- aGUAGCCCCuCA-GGACG--------GGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 128511 0.74 0.253305
Target:  5'- gCGUCGGGGuGGcCCUggggcGCCCCUcGCCCa -3'
miRNA:   3'- aGUAGCCCC-UCaGGA-----CGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 110414 0.72 0.337654
Target:  5'- cCGUCgGGGGAG-CUgGCCCCCcgGCCUc -3'
miRNA:   3'- aGUAG-CCCCUCaGGaCGGGGGa-CGGG- -5'
29083 3' -62.1 NC_006146.1 + 61696 0.72 0.359809
Target:  5'- -gGUUGGGGAccgccgccaGUCCaGCCCUCUGUCUg -3'
miRNA:   3'- agUAGCCCCU---------CAGGaCGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 168413 0.71 0.367416
Target:  5'- cUCGUCGGccAGcugCCUGCCCCCgccgGCCa -3'
miRNA:   3'- -AGUAGCCccUCa--GGACGGGGGa---CGGg -5'
29083 3' -62.1 NC_006146.1 + 13360 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 16438 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 19516 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 22594 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 25672 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 28750 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 127959 0.71 0.407079
Target:  5'- cUCGUCGcGGGAGUCCUccggagcuugGCgCCgCUGCUg -3'
miRNA:   3'- -AGUAGC-CCCUCAGGA----------CG-GGgGACGGg -5'
29083 3' -62.1 NC_006146.1 + 76436 0.71 0.415328
Target:  5'- aCAUgccCGGuGGAGugcgagguguUCCUcgaGCCCCUUGCCCa -3'
miRNA:   3'- aGUA---GCC-CCUC----------AGGA---CGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 16009 0.7 0.432128
Target:  5'- gUCAgccCGGGcGAGgcCCUGCCCCCcgacggGCUCu -3'
miRNA:   3'- -AGUa--GCCC-CUCa-GGACGGGGGa-----CGGG- -5'
29083 3' -62.1 NC_006146.1 + 3196 0.7 0.449319
Target:  5'- uUCAgaaaGGGGGGcugcugcuguUCCUGuCCCaCCUGCCg -3'
miRNA:   3'- -AGUag--CCCCUC----------AGGAC-GGG-GGACGGg -5'
29083 3' -62.1 NC_006146.1 + 142381 0.7 0.458055
Target:  5'- ---cCGGGGuGUUgaGCCUgCUGCCCc -3'
miRNA:   3'- aguaGCCCCuCAGgaCGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 148537 0.7 0.458055
Target:  5'- ---cCGGGGuGUUgaGCCUgCUGCCCc -3'
miRNA:   3'- aguaGCCCCuCAGgaCGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 151615 0.7 0.458055
Target:  5'- ---cCGGGGuGUUgaGCCUgCUGCCCc -3'
miRNA:   3'- aguaGCCCCuCAGgaCGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 157770 0.7 0.458055
Target:  5'- ---cCGGGGuGUUgaGCCUgCUGCCCc -3'
miRNA:   3'- aguaGCCCCuCAGgaCGGGgGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.