miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 3' -62.1 NC_006146.1 + 111451 1.11 0.000702
Target:  5'- aUCAUCGGGGAGUCCUGCCCCCUGCCCu -3'
miRNA:   3'- -AGUAGCCCCUCAGGACGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 62777 0.68 0.530905
Target:  5'- cCAgcgUGuGGGuGU-CUGCCCCCUGUCUg -3'
miRNA:   3'- aGUa--GC-CCCuCAgGACGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 137995 0.68 0.559331
Target:  5'- gCGgggUGGGGGGUgC-GCCCCCaGCCg -3'
miRNA:   3'- aGUa--GCCCCUCAgGaCGGGGGaCGGg -5'
29083 3' -62.1 NC_006146.1 + 130055 0.66 0.685177
Target:  5'- ---cCGGGcc-UCCaagagcGCCCCCUGCCCc -3'
miRNA:   3'- aguaGCCCcucAGGa-----CGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 13360 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 16438 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 22594 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 25672 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 55705 0.69 0.475793
Target:  5'- cCGcCGGGGGGcUCUGCCCgCCgcugGCCUc -3'
miRNA:   3'- aGUaGCCCCUCaGGACGGG-GGa---CGGG- -5'
29083 3' -62.1 NC_006146.1 + 52866 0.68 0.529966
Target:  5'- ---cCGGGGgcuccagguccguGGUCCUcgcgGCCCCgaGCCCc -3'
miRNA:   3'- aguaGCCCC-------------UCAGGA----CGGGGgaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 150921 0.69 0.493867
Target:  5'- gCGUCGuGGGGccUCCUgaccucgcagacGCCCCCgGCCCu -3'
miRNA:   3'- aGUAGCcCCUC--AGGA------------CGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 3196 0.7 0.449319
Target:  5'- uUCAgaaaGGGGGGcugcugcuguUCCUGuCCCaCCUGCCg -3'
miRNA:   3'- -AGUag--CCCCUC----------AGGAC-GGG-GGACGGg -5'
29083 3' -62.1 NC_006146.1 + 166029 0.8 0.114875
Target:  5'- gCAUCGGGG-GUgCCUGUggcccccgCCCCUGCCCc -3'
miRNA:   3'- aGUAGCCCCuCA-GGACG--------GGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 105689 0.69 0.503021
Target:  5'- aCGUCaaaGGGAGgagcuauuUCCU-CCCCCUGCCa -3'
miRNA:   3'- aGUAGc--CCCUC--------AGGAcGGGGGACGGg -5'
29083 3' -62.1 NC_006146.1 + 128511 0.74 0.253305
Target:  5'- gCGUCGGGGuGGcCCUggggcGCCCCUcGCCCa -3'
miRNA:   3'- aGUAGCCCC-UCaGGA-----CGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 28750 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 44247 0.69 0.512248
Target:  5'- cCGggCGGcGGuGUCCauUGCCCCUgcggGCCCc -3'
miRNA:   3'- aGUa-GCC-CCuCAGG--ACGGGGGa---CGGG- -5'
29083 3' -62.1 NC_006146.1 + 136711 0.68 0.559331
Target:  5'- cCggCGGGGGGUggccggccgcugCCggGUCCgCUGCCCg -3'
miRNA:   3'- aGuaGCCCCUCA------------GGa-CGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 110414 0.72 0.337654
Target:  5'- cCGUCgGGGGAG-CUgGCCCCCcgGCCUc -3'
miRNA:   3'- aGUAG-CCCCUCaGGaCGGGGGa-CGGG- -5'
29083 3' -62.1 NC_006146.1 + 19516 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.