miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 3' -62.1 NC_006146.1 + 402 0.67 0.597843
Target:  5'- gCcgCGcgcuGGGGGUCCggggaaGCCCCCcGCUCg -3'
miRNA:   3'- aGuaGC----CCCUCAGGa-----CGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 589 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 1520 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 2452 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 2650 0.67 0.588166
Target:  5'- aCggCGGGGAccaUCCaGCCCaaCUGCCCu -3'
miRNA:   3'- aGuaGCCCCUc--AGGaCGGGg-GACGGG- -5'
29083 3' -62.1 NC_006146.1 + 3196 0.7 0.449319
Target:  5'- uUCAgaaaGGGGGGcugcugcuguUCCUGuCCCaCCUGCCg -3'
miRNA:   3'- -AGUag--CCCCUC----------AGGAC-GGG-GGACGGg -5'
29083 3' -62.1 NC_006146.1 + 3384 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 13360 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 14768 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 16009 0.7 0.432128
Target:  5'- gUCAgccCGGGcGAGgcCCUGCCCCCcgacggGCUCu -3'
miRNA:   3'- -AGUa--GCCC-CUCa-GGACGGGGGa-----CGGG- -5'
29083 3' -62.1 NC_006146.1 + 16438 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 17846 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 19516 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 20924 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 22594 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 24001 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 25672 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5'
29083 3' -62.1 NC_006146.1 + 25888 0.67 0.626986
Target:  5'- aCAUugUGGuGGAGagCUcCUCCCUGCCCa -3'
miRNA:   3'- aGUA--GCC-CCUCagGAcGGGGGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 27079 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 28750 0.71 0.390893
Target:  5'- gUCAgaGGGGAG-CC-GCCCUCgggGCCCa -3'
miRNA:   3'- -AGUagCCCCUCaGGaCGGGGGa--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.