Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 3' | -51.5 | NC_006146.1 | + | 85602 | 0.67 | 0.982781 |
Target: 5'- cGCCUCG-GAAGC-UGGCAcCGggGCAa -3' miRNA: 3'- cCGGAGCuUUUCGcACCGUuGUa-CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 86501 | 0.69 | 0.957018 |
Target: 5'- gGGCCUUGAGGGGCagcugggcuugaggGGCAACuggGCu -3' miRNA: 3'- -CCGGAGCUUUUCGca------------CCGUUGua-CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 90987 | 0.73 | 0.797115 |
Target: 5'- gGGUUUCGGGAAGCccccGUGGCAuaacccgcuuuagagGCAUGCu -3' miRNA: 3'- -CCGGAGCUUUUCG----CACCGU---------------UGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 104737 | 0.66 | 0.989489 |
Target: 5'- uGGcCCUCGGucauGAGCacccUGGCAACA-GCu -3' miRNA: 3'- -CC-GGAGCUu---UUCGc---ACCGUUGUaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 112135 | 0.77 | 0.617217 |
Target: 5'- uGGCCUCGguGcugacauuggagguAGCGuUGGCGGCAUGUg -3' miRNA: 3'- -CCGGAGCuuU--------------UCGC-ACCGUUGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 113098 | 1.12 | 0.005086 |
Target: 5'- cGGCCUCGAAAAGCGUGGCAACAUGCAg -3' miRNA: 3'- -CCGGAGCUUUUCGCACCGUUGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 113702 | 0.66 | 0.991967 |
Target: 5'- cGGCC-CGggGacGGCGgcGGCAGCcgGg- -3' miRNA: 3'- -CCGGaGCuuU--UCGCa-CCGUUGuaCgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 115355 | 0.71 | 0.898651 |
Target: 5'- aGGCCUuccUGGccGGCGUGGCGGCGgaGCu -3' miRNA: 3'- -CCGGA---GCUuuUCGCACCGUUGUa-CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 124132 | 0.66 | 0.989489 |
Target: 5'- uGGCUgugCGGu-GGCGcguuUGGCAGCAUGg- -3' miRNA: 3'- -CCGGa--GCUuuUCGC----ACCGUUGUACgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 125294 | 0.73 | 0.829421 |
Target: 5'- aGGCCagcacUCuGAAGGGCGUGGUAaauuucaucugGCAUGCc -3' miRNA: 3'- -CCGG-----AG-CUUUUCGCACCGU-----------UGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 127436 | 0.69 | 0.947013 |
Target: 5'- cGGCCgcCGAGGAGgcugccgcuccagaUGUGGCGGCccGCAg -3' miRNA: 3'- -CCGGa-GCUUUUC--------------GCACCGUUGuaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 127836 | 0.7 | 0.928784 |
Target: 5'- aGCCUCcccuGGAGGGUGggcuugGGCAGCcgGCGu -3' miRNA: 3'- cCGGAG----CUUUUCGCa-----CCGUUGuaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 128275 | 0.7 | 0.928243 |
Target: 5'- cGGCCgcu---GGCGUGGCAcgucagcACGUGCu -3' miRNA: 3'- -CCGGagcuuuUCGCACCGU-------UGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 128764 | 0.68 | 0.973261 |
Target: 5'- aGGCCUUcuucuGGAGUGUGGcCAGCAggGCc -3' miRNA: 3'- -CCGGAGcu---UUUCGCACC-GUUGUa-CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 128893 | 0.66 | 0.991967 |
Target: 5'- gGGCC-CGAAc-GCG-GGCuuCGUGCu -3' miRNA: 3'- -CCGGaGCUUuuCGCaCCGuuGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 130266 | 0.66 | 0.988044 |
Target: 5'- gGGCCaccaugcuaUCGGguaacgcgggaGAAGCaGcGGCGGCAUGCGg -3' miRNA: 3'- -CCGG---------AGCU-----------UUUCG-CaCCGUUGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 130791 | 0.74 | 0.754895 |
Target: 5'- gGGCCUCuccAAAAGCGUGaGCGAgcUGCAg -3' miRNA: 3'- -CCGGAGc--UUUUCGCAC-CGUUguACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 132552 | 0.7 | 0.928784 |
Target: 5'- aGGCCUCGGgucGGAGCGUgagaucgguGGCAcggaGCG-GCAa -3' miRNA: 3'- -CCGGAGCU---UUUCGCA---------CCGU----UGUaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 132973 | 0.69 | 0.943828 |
Target: 5'- gGGuCCUCGggGGGCGgUGGaGACcgcggGUGCGg -3' miRNA: 3'- -CC-GGAGCuuUUCGC-ACCgUUG-----UACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 140751 | 0.68 | 0.970379 |
Target: 5'- cGCuCUCGGAu-GCGUGGC--CAUGCc -3' miRNA: 3'- cCG-GAGCUUuuCGCACCGuuGUACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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