miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 40821 0.66 0.993018
Target:  5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3'
miRNA:   3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 149622 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 13999 0.73 0.832865
Target:  5'- aGGCCUCGGccgggcuggugcuggAAGGCGgagGGCAGgGaGCAg -3'
miRNA:   3'- -CCGGAGCU---------------UUUCGCa--CCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 74480 0.71 0.874641
Target:  5'- uGGCCUUGAGcGGCGcuguguucaggagcUGGCAcaucuucGCGUGCu -3'
miRNA:   3'- -CCGGAGCUUuUCGC--------------ACCGU-------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 115355 0.71 0.898651
Target:  5'- aGGCCUuccUGGccGGCGUGGCGGCGgaGCu -3'
miRNA:   3'- -CCGGA---GCUuuUCGCACCGUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 169519 0.66 0.986451
Target:  5'- cGGCaaCGAuGAGCa--GCAACAUGCAg -3'
miRNA:   3'- -CCGgaGCUuUUCGcacCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 72138 0.66 0.988044
Target:  5'- aGGCauuccUGAAAGGCGUG-CAAgAUGCGg -3'
miRNA:   3'- -CCGga---GCUUUUCGCACcGUUgUACGU- -5'
29085 3' -51.5 NC_006146.1 + 65043 0.67 0.984882
Target:  5'- gGGCCcacugCGAGGAGCGgcacugcgucuacucGGCGGCGcgggGCAg -3'
miRNA:   3'- -CCGGa----GCUUUUCGCa--------------CCGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 10675 0.67 0.9847
Target:  5'- aGGCC-CGggGcgauacccGCG-GGCAuCAUGCAg -3'
miRNA:   3'- -CCGGaGCuuUu-------CGCaCCGUuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 69844 0.67 0.978407
Target:  5'- -aCCggCGAGAAGCGgguacgcaGGCGcagGCAUGCAg -3'
miRNA:   3'- ccGGa-GCUUUUCGCa-------CCGU---UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 128764 0.68 0.973261
Target:  5'- aGGCCUUcuucuGGAGUGUGGcCAGCAggGCc -3'
miRNA:   3'- -CCGGAGcu---UUUCGCACC-GUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 51821 0.68 0.967282
Target:  5'- cGGCCuccUCGGGAAGCGccggaggugGGCuGCGguUGCAg -3'
miRNA:   3'- -CCGG---AGCUUUUCGCa--------CCGuUGU--ACGU- -5'
29085 3' -51.5 NC_006146.1 + 86501 0.69 0.957018
Target:  5'- gGGCCUUGAGGGGCagcugggcuugaggGGCAACuggGCu -3'
miRNA:   3'- -CCGGAGCUUUUCGca------------CCGUUGua-CGu -5'
29085 3' -51.5 NC_006146.1 + 155229 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 158308 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 41084 0.66 0.986451
Target:  5'- aGGCCagGGAcAGCGaggGGagccaGGCGUGCAg -3'
miRNA:   3'- -CCGGagCUUuUCGCa--CCg----UUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 24091 0.66 0.990027
Target:  5'- cGGCCUCGccugggacgcgggucGAGGGCGgcUGGCAcCggGCc -3'
miRNA:   3'- -CCGGAGC---------------UUUUCGC--ACCGUuGuaCGu -5'
29085 3' -51.5 NC_006146.1 + 152688 0.66 0.990793
Target:  5'- aGGUCUCGAAGGggcccugagauGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGAGCUUUU-----------CgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 64243 0.71 0.90518
Target:  5'- gGGCCggggCGGGAggGGCGUGGCucgcuccgAACAUGgGu -3'
miRNA:   3'- -CCGGa---GCUUU--UCGCACCG--------UUGUACgU- -5'
29085 3' -51.5 NC_006146.1 + 15417 0.71 0.90518
Target:  5'- uGGCCUCaGAGGGGC-UGGCccGGC-UGCAg -3'
miRNA:   3'- -CCGGAG-CUUUUCGcACCG--UUGuACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.