miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 85602 0.67 0.982781
Target:  5'- cGCCUCG-GAAGC-UGGCAcCGggGCAa -3'
miRNA:   3'- cCGGAGCuUUUCGcACCGUuGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 60666 0.66 0.991967
Target:  5'- uGGCUUCGugacAAG-GUGGCGGC-UGCc -3'
miRNA:   3'- -CCGGAGCuu--UUCgCACCGUUGuACGu -5'
29085 3' -51.5 NC_006146.1 + 56784 0.67 0.980686
Target:  5'- aGGCCuccUCGguGAGCGcGGCGGCcgucugGCGg -3'
miRNA:   3'- -CCGG---AGCuuUUCGCaCCGUUGua----CGU- -5'
29085 3' -51.5 NC_006146.1 + 130791 0.74 0.754895
Target:  5'- gGGCCUCuccAAAAGCGUGaGCGAgcUGCAg -3'
miRNA:   3'- -CCGGAGc--UUUUCGCAC-CGUUguACGU- -5'
29085 3' -51.5 NC_006146.1 + 48001 0.66 0.991967
Target:  5'- uGGCUgguggCGGGAGGCuUGGCGGgGgagGCAc -3'
miRNA:   3'- -CCGGa----GCUUUUCGcACCGUUgUa--CGU- -5'
29085 3' -51.5 NC_006146.1 + 130266 0.66 0.988044
Target:  5'- gGGCCaccaugcuaUCGGguaacgcgggaGAAGCaGcGGCGGCAUGCGg -3'
miRNA:   3'- -CCGG---------AGCU-----------UUUCG-CaCCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 113702 0.66 0.991967
Target:  5'- cGGCC-CGggGacGGCGgcGGCAGCcgGg- -3'
miRNA:   3'- -CCGGaGCuuU--UCGCa-CCGUUGuaCgu -5'
29085 3' -51.5 NC_006146.1 + 45169 0.66 0.993018
Target:  5'- aGGCCUCGGAAucGGC--GGCGGCGc--- -3'
miRNA:   3'- -CCGGAGCUUU--UCGcaCCGUUGUacgu -5'
29085 3' -51.5 NC_006146.1 + 112135 0.77 0.617217
Target:  5'- uGGCCUCGguGcugacauuggagguAGCGuUGGCGGCAUGUg -3'
miRNA:   3'- -CCGGAGCuuU--------------UCGC-ACCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 113098 1.12 0.005086
Target:  5'- cGGCCUCGAAAAGCGUGGCAACAUGCAg -3'
miRNA:   3'- -CCGGAGCUUUUCGCACCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 125294 0.73 0.829421
Target:  5'- aGGCCagcacUCuGAAGGGCGUGGUAaauuucaucugGCAUGCc -3'
miRNA:   3'- -CCGG-----AG-CUUUUCGCACCGU-----------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 39283 0.7 0.934052
Target:  5'- cGGaCUCGAGAcGGCagGUGGCAGCAgagGCc -3'
miRNA:   3'- -CCgGAGCUUU-UCG--CACCGUUGUa--CGu -5'
29085 3' -51.5 NC_006146.1 + 53187 0.73 0.829421
Target:  5'- cGGCCUCGGccccGGCcuuggggGGCGGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuu--UCGca-----CCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 156029 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 86501 0.69 0.957018
Target:  5'- gGGCCUUGAGGGGCagcugggcuugaggGGCAACuggGCu -3'
miRNA:   3'- -CCGGAGCUUUUCGca------------CCGUUGua-CGu -5'
29085 3' -51.5 NC_006146.1 + 51821 0.68 0.967282
Target:  5'- cGGCCuccUCGGGAAGCGccggaggugGGCuGCGguUGCAg -3'
miRNA:   3'- -CCGG---AGCUUUUCGCa--------CCGuUGU--ACGU- -5'
29085 3' -51.5 NC_006146.1 + 128764 0.68 0.973261
Target:  5'- aGGCCUUcuucuGGAGUGUGGcCAGCAggGCc -3'
miRNA:   3'- -CCGGAGcu---UUUCGCACC-GUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 69844 0.67 0.978407
Target:  5'- -aCCggCGAGAAGCGgguacgcaGGCGcagGCAUGCAg -3'
miRNA:   3'- ccGGa-GCUUUUCGCa-------CCGU---UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 158308 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 155229 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.