miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 52236 0.67 0.975935
Target:  5'- aGGCCUCGGgcagAAAGUagagGUGGaCGcACGUGUAc -3'
miRNA:   3'- -CCGGAGCU----UUUCG----CACC-GU-UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 53187 0.73 0.829421
Target:  5'- cGGCCUCGGccccGGCcuuggggGGCGGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuu--UCGca-----CCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 53793 0.66 0.990793
Target:  5'- gGGCCUCGGcccGCGcGGCGucCAUaGCGg -3'
miRNA:   3'- -CCGGAGCUuuuCGCaCCGUu-GUA-CGU- -5'
29085 3' -51.5 NC_006146.1 + 55920 0.67 0.978407
Target:  5'- uGGCCUUGAuguccGCGgccgugGGCugcuGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuuu--CGCa-----CCGu---UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 56307 0.69 0.952607
Target:  5'- uGGCCgugcuggaCGAAguGAGCGUGGaCAGCcugAUGCu -3'
miRNA:   3'- -CCGGa-------GCUU--UUCGCACC-GUUG---UACGu -5'
29085 3' -51.5 NC_006146.1 + 56346 0.69 0.952607
Target:  5'- aGGCCgccCGGAgcagguaguAGGCGUGGUGGCGgaGCAc -3'
miRNA:   3'- -CCGGa--GCUU---------UUCGCACCGUUGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 56784 0.67 0.980686
Target:  5'- aGGCCuccUCGguGAGCGcGGCGGCcgucugGCGg -3'
miRNA:   3'- -CCGG---AGCuuUUCGCaCCGUUGua----CGU- -5'
29085 3' -51.5 NC_006146.1 + 56841 0.7 0.934052
Target:  5'- cGGCCUCuGGcGGCGggGGCGGCA-GCu -3'
miRNA:   3'- -CCGGAGcUUuUCGCa-CCGUUGUaCGu -5'
29085 3' -51.5 NC_006146.1 + 57017 0.66 0.988044
Target:  5'- uGGCCgagGAGGAG-GUGGCGGuggaGUGCGg -3'
miRNA:   3'- -CCGGag-CUUUUCgCACCGUUg---UACGU- -5'
29085 3' -51.5 NC_006146.1 + 57766 0.76 0.641471
Target:  5'- aGCCUCGggGGGCGUgggagauuugaGGCAGCcgcccUGCAu -3'
miRNA:   3'- cCGGAGCuuUUCGCA-----------CCGUUGu----ACGU- -5'
29085 3' -51.5 NC_006146.1 + 60666 0.66 0.991967
Target:  5'- uGGCUUCGugacAAG-GUGGCGGC-UGCc -3'
miRNA:   3'- -CCGGAGCuu--UUCgCACCGUUGuACGu -5'
29085 3' -51.5 NC_006146.1 + 61794 0.66 0.986451
Target:  5'- aGCCUCGuuacAGAAGUG-GGCGcGCcgGCAc -3'
miRNA:   3'- cCGGAGC----UUUUCGCaCCGU-UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 64159 0.76 0.673027
Target:  5'- gGGCCUCGGAGucugccaggcugGGUGggGGCAGCAggaguUGCAa -3'
miRNA:   3'- -CCGGAGCUUU------------UCGCa-CCGUUGU-----ACGU- -5'
29085 3' -51.5 NC_006146.1 + 64243 0.71 0.90518
Target:  5'- gGGCCggggCGGGAggGGCGUGGCucgcuccgAACAUGgGu -3'
miRNA:   3'- -CCGGa---GCUUU--UCGCACCG--------UUGUACgU- -5'
29085 3' -51.5 NC_006146.1 + 65043 0.67 0.984882
Target:  5'- gGGCCcacugCGAGGAGCGgcacugcgucuacucGGCGGCGcgggGCAg -3'
miRNA:   3'- -CCGGa----GCUUUUCGCa--------------CCGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 66306 0.68 0.973261
Target:  5'- cGGCCaUCGucGGAGaCGUGGUAGCAgaagGUu -3'
miRNA:   3'- -CCGG-AGCu-UUUC-GCACCGUUGUa---CGu -5'
29085 3' -51.5 NC_006146.1 + 69844 0.67 0.978407
Target:  5'- -aCCggCGAGAAGCGgguacgcaGGCGcagGCAUGCAg -3'
miRNA:   3'- ccGGa-GCUUUUCGCa-------CCGU---UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 71456 0.69 0.943828
Target:  5'- uGGCgC-CGAGGAGCGagGGCcuCAUGCu -3'
miRNA:   3'- -CCG-GaGCUUUUCGCa-CCGuuGUACGu -5'
29085 3' -51.5 NC_006146.1 + 72138 0.66 0.988044
Target:  5'- aGGCauuccUGAAAGGCGUG-CAAgAUGCGg -3'
miRNA:   3'- -CCGga---GCUUUUCGCACcGUUgUACGU- -5'
29085 3' -51.5 NC_006146.1 + 74480 0.71 0.874641
Target:  5'- uGGCCUUGAGcGGCGcuguguucaggagcUGGCAcaucuucGCGUGCu -3'
miRNA:   3'- -CCGGAGCUUuUCGC--------------ACCGU-------UGUACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.