miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 143466 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 142917 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 140751 0.68 0.970379
Target:  5'- cGCuCUCGGAu-GCGUGGC--CAUGCc -3'
miRNA:   3'- cCG-GAGCUUuuCGCACCGuuGUACGu -5'
29085 3' -51.5 NC_006146.1 + 132973 0.69 0.943828
Target:  5'- gGGuCCUCGggGGGCGgUGGaGACcgcggGUGCGg -3'
miRNA:   3'- -CC-GGAGCuuUUCGC-ACCgUUG-----UACGU- -5'
29085 3' -51.5 NC_006146.1 + 132552 0.7 0.928784
Target:  5'- aGGCCUCGGgucGGAGCGUgagaucgguGGCAcggaGCG-GCAa -3'
miRNA:   3'- -CCGGAGCU---UUUCGCA---------CCGU----UGUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 130791 0.74 0.754895
Target:  5'- gGGCCUCuccAAAAGCGUGaGCGAgcUGCAg -3'
miRNA:   3'- -CCGGAGc--UUUUCGCAC-CGUUguACGU- -5'
29085 3' -51.5 NC_006146.1 + 130266 0.66 0.988044
Target:  5'- gGGCCaccaugcuaUCGGguaacgcgggaGAAGCaGcGGCGGCAUGCGg -3'
miRNA:   3'- -CCGG---------AGCU-----------UUUCG-CaCCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 128893 0.66 0.991967
Target:  5'- gGGCC-CGAAc-GCG-GGCuuCGUGCu -3'
miRNA:   3'- -CCGGaGCUUuuCGCaCCGuuGUACGu -5'
29085 3' -51.5 NC_006146.1 + 128764 0.68 0.973261
Target:  5'- aGGCCUUcuucuGGAGUGUGGcCAGCAggGCc -3'
miRNA:   3'- -CCGGAGcu---UUUCGCACC-GUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 128275 0.7 0.928243
Target:  5'- cGGCCgcu---GGCGUGGCAcgucagcACGUGCu -3'
miRNA:   3'- -CCGGagcuuuUCGCACCGU-------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 127836 0.7 0.928784
Target:  5'- aGCCUCcccuGGAGGGUGggcuugGGCAGCcgGCGu -3'
miRNA:   3'- cCGGAG----CUUUUCGCa-----CCGUUGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 127436 0.69 0.947013
Target:  5'- cGGCCgcCGAGGAGgcugccgcuccagaUGUGGCGGCccGCAg -3'
miRNA:   3'- -CCGGa-GCUUUUC--------------GCACCGUUGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 125294 0.73 0.829421
Target:  5'- aGGCCagcacUCuGAAGGGCGUGGUAaauuucaucugGCAUGCc -3'
miRNA:   3'- -CCGG-----AG-CUUUUCGCACCGU-----------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 124132 0.66 0.989489
Target:  5'- uGGCUgugCGGu-GGCGcguuUGGCAGCAUGg- -3'
miRNA:   3'- -CCGGa--GCUuuUCGC----ACCGUUGUACgu -5'
29085 3' -51.5 NC_006146.1 + 115355 0.71 0.898651
Target:  5'- aGGCCUuccUGGccGGCGUGGCGGCGgaGCu -3'
miRNA:   3'- -CCGGA---GCUuuUCGCACCGUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 113702 0.66 0.991967
Target:  5'- cGGCC-CGggGacGGCGgcGGCAGCcgGg- -3'
miRNA:   3'- -CCGGaGCuuU--UCGCa-CCGUUGuaCgu -5'
29085 3' -51.5 NC_006146.1 + 113098 1.12 0.005086
Target:  5'- cGGCCUCGAAAAGCGUGGCAACAUGCAg -3'
miRNA:   3'- -CCGGAGCUUUUCGCACCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 112135 0.77 0.617217
Target:  5'- uGGCCUCGguGcugacauuggagguAGCGuUGGCGGCAUGUg -3'
miRNA:   3'- -CCGGAGCuuU--------------UCGC-ACCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 104737 0.66 0.989489
Target:  5'- uGGcCCUCGGucauGAGCacccUGGCAACA-GCu -3'
miRNA:   3'- -CC-GGAGCUu---UUCGc---ACCGUUGUaCGu -5'
29085 3' -51.5 NC_006146.1 + 90987 0.73 0.797115
Target:  5'- gGGUUUCGGGAAGCccccGUGGCAuaacccgcuuuagagGCAUGCu -3'
miRNA:   3'- -CCGGAGCUUUUCG----CACCGU---------------UGUACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.